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WormBase Tree Display for Gene: WBGene00012936

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Name Class

WBGene00012936SMapS_parentSequenceY47D3A
IdentityVersion2
NameCGC_namepola-1Person_evidenceWBPerson30546
Sequence_nameY47D3A.29
Molecular_nameY47D3A.29
Y47D3A.29.1
CE32262
Other_nameCELE_Y47D3A.29Accession_evidenceNDBBX284603
Public_namepola-1
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:54WBPerson1971EventImportedInitial conversion from CDS class of WS125
205 Apr 2017 11:17:23WBPerson2970Name_changeCGC_namepola-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpola
Allele (164)
StrainWBStrain00051196
RNASeq_FPKM (74)
GO_annotation (27)
Contained_in_operonCEOP3720
OrthologWBGene00033984Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00055908Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00191104Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00184813Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00228600Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g4491Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g7409Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g8886Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g1781Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g16824Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g21003Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g10673Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g4742Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g19057Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g27540Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g10058Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00036.g2016Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00036.g2041Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-Y47D3A.29Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_III.g9760Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_III.g9761Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_III.g9762Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_III.g9775Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold596.g5302Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_02528.g26867Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_18203Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_010313Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g06901Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g4715Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30096500Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g8997Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00131564Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00237859Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00277965Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00263165Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00290788Trichuris murisFrom_analysisWormBase-Compara
SGD:S000005046Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0259113Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-030114-9Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:9173Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:99660Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:621816Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00008645Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00021344Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionY47D3A.29 encodes the catalytic subunit of DNA polymerase alpha; large-scale RNAi screens indicate that Y47D3A.29 activity is essential for embryogenesis and required specifically for normal pronuclear migration, as well as normal nuclear position and cell division timing in early blastomeres.Paper_evidenceWBPaper00005654
WBPaper00006395
WBPaper00025054
Curator_confirmedWBPerson1843
Date_last_updated06 Apr 2007 00:00:00
Automated_descriptionPredicted to enable DNA binding activity; DNA-directed DNA polymerase activity; and chromatin binding activity. Predicted to be involved in lagging strand elongation; leading strand elongation; and mitotic DNA replication initiation. Predicted to be located in nucleus. Predicted to be part of alpha DNA polymerase:primase complex. Human ortholog(s) of this gene implicated in Van Esch-O'Driscoll syndrome and X-linked reticulate pigmentary disorder. Is an ortholog of human POLA1 (DNA polymerase alpha 1, catalytic subunit).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0111840Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:9173)
DOID:0111834Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:9173)
Molecular_infoCorresponding_CDSY47D3A.29
Corresponding_CDS_historyY47D3A.29:wp89
Y47D3A.29b:wp279
Corresponding_transcriptY47D3A.29.1
Other_sequence (28)
Associated_featureWBsf645602
WBsf645603
WBsf659569
WBsf659570
WBsf1015933
WBsf1015934
WBsf225798
Experimental_infoRNAi_resultWBRNAi00075442Inferred_automaticallyRNAi_primary
WBRNAi00026719Inferred_automaticallyRNAi_primary
WBRNAi00009341Inferred_automaticallyRNAi_primary
WBRNAi00056755Inferred_automaticallyRNAi_primary
WBRNAi00026720Inferred_automaticallyRNAi_primary
WBRNAi00097143Inferred_automaticallyRNAi_primary
WBRNAi00114561Inferred_automaticallyRNAi_primary
WBRNAi00009342Inferred_automaticallyRNAi_primary
Expr_patternExpr1012413
Expr1035733
Expr1160213
Expr2014989
Expr2033224
Microarray_results (23)
Expression_cluster (139)
Interaction (123)
Map_infoMapIIIPosition6.49087
PositivePositive_cloneY47D3AInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00031307
WBPaper00035228
WBPaper00038491
WBPaper00054520
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene