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WormBase Tree Display for Gene: WBGene00012936

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Name Class

WBGene00012936SMapS_parentSequenceY47D3A
IdentityVersion2
NameCGC_namepola-1Person_evidenceWBPerson30546
Sequence_nameY47D3A.29
Molecular_nameY47D3A.29
Y47D3A.29.1
CE32262
Other_nameCELE_Y47D3A.29Accession_evidenceNDBBX284603
Public_namepola-1
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:54WBPerson1971EventImportedInitial conversion from CDS class of WS125
205 Apr 2017 11:17:23WBPerson2970Name_changeCGC_namepola-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpola
Allele (164)
StrainWBStrain00051196
RNASeq_FPKM (74)
GO_annotation (27)
Contained_in_operonCEOP3720
Ortholog (42)
ParalogWBGene00008645Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00021344Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_description (2)
Disease_infoPotential_modelDOID:0111840Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:9173)
DOID:0111834Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:9173)
Molecular_infoCorresponding_CDSY47D3A.29
Corresponding_CDS_historyY47D3A.29:wp89
Y47D3A.29b:wp279
Corresponding_transcriptY47D3A.29.1
Other_sequence (28)
Associated_featureWBsf645602
WBsf645603
WBsf659569
WBsf659570
WBsf1015933
WBsf1015934
WBsf225798
Experimental_infoRNAi_resultWBRNAi00075442Inferred_automaticallyRNAi_primary
WBRNAi00026719Inferred_automaticallyRNAi_primary
WBRNAi00009341Inferred_automaticallyRNAi_primary
WBRNAi00056755Inferred_automaticallyRNAi_primary
WBRNAi00026720Inferred_automaticallyRNAi_primary
WBRNAi00097143Inferred_automaticallyRNAi_primary
WBRNAi00114561Inferred_automaticallyRNAi_primary
WBRNAi00009342Inferred_automaticallyRNAi_primary
Expr_patternExpr1012413
Expr1035733
Expr1160213
Expr2014989
Expr2033224
Microarray_results (23)
Expression_clusterWBPaper00033065:cyc-1(RNAi)_downregulated
WBPaper00037946:LIN-39_interacting
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00044037:eat-2_downregulated
WBPaper00044426:rotenone_24h_downregulated
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_downregulated
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045521:Gender_Neutral
WBPaper00046337:polysomal_daf-2_vs_daf-2;daf-16_upregulated
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00046509:lin-35(n745)_upregulated
WBPaper00048690:male-Z1-Z4-daughter_enriched
WBPaper00048988:neuron_expressed
WBPaper00049498:npr-1(ur89)_regulated_6
WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
WBPaper00049920:Glucose-Diet_downregulated_hyl-2(tm2031)
WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050015:ifg-1(RNAi)_upregulated
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050743:elli-1(sam-3)_upregulated
WBPaper00050801:DAF-12_dauer_regulome
WBPaper00051039:germline_enriched
WBPaper00051265:F1_morc-1(tm6048)_downregulated
WBPaper00051265:F4_morc-1(tm6048)_upregulated
WBPaper00051311:VGLN-1-interacting
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053289:DREAM-target
WBPaper00053302:alovudine_24h_regulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053713:Starvation-induced_postdauer_vs_control_downregulated
WBPaper00053810:nuo-6(qm200)_downregulated
WBPaper00053814:25C_downregulated_OP50
WBPaper00053814:25C_downregulated_PY79
WBPaper00055226:ADR-2_target_N2
WBPaper00055334:DLC-1_interacting
WBPaper00055648:germline_expressed
WBPaper00055971:nhl-2(ok818)_20C_upregulated
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056034:pals-22(jy3)_downregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056471:S.aureus-4h_upregulated_N2
WBPaper00057288:Cold_downregulated_transcript
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00058598:mex-3(eu149)_downregulated
WBPaper00059027:neuron-synapses_enriched
WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
WBPaper00059356:BAZ-2_SET-6_interacting
WBPaper00059471:EGL-43_interacting
WBPaper00059664:srbc-48(ac23)_downregulated
WBPaper00060014:set-2(tm1630)_upregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060459:bcat-1(RNAi)_downregulated
WBPaper00060661:sensory-neuron_depleted
WBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00061007:S.aquatilis_downregulated
WBPaper00061340:Ciliated_amphid_neuron
WBPaper00061340:Ciliated_non_amphid_neuron
WBPaper00061340:Excretory_cell_parent
WBPaper00061340:Neuroblast_ASE_ASJ_AUA
WBPaper00061341:28C_24h_downregulated
WBPaper00061478:SUMO-conjugated_protein
WBPaper00061479:HDA-1_interacting_protein
WBPaper00061527:dpy-26-B0205.1
WBPaper00061699:daf-18(ok480)_upregulated
WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
WBPaper00062056:efl-1(se1)_upregulated
WBPaper00062056:lin-35(n745)_upregulated
WBPaper00062056:lin-36(we31)_upregulated
WBPaper00062056:lin-36(we36)_upregulated
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062456:doxycycline_downregulated_CB4856_protein
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064107:lin-35(n745)_upregulated
WBPaper00064122:vulva_transcriptome
WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
WBPaper00064315:mes-3(bn199)_downregulated_EGCs
WBPaper00064315:mes-4(bn73)_downregulated_EGCs
WBPaper00064716:paraquat_upregulated
WBPaper00065373:sek-1(km4)_upregulated_cisplatin
WBPaper00065975:P-body_vs_oocyte_depleted
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066110:tetraploid_vs_diploid_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
cgc4386_cluster_5_1
cgc4489_group_8
WBPaper00025032:cluster_122
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026980:intestine_enriched
WBPaper00031832:slr-2_regulated
WBPaper00032165:differentially_expressed_with_age_medoid_2
WBPaper00036130:mir-243_down_regulated
WBPaper00036286:Pattern_B
WBPaper00040426:CYD-1_CDK-4_upregulated
WBPaper00040426:CYE-1_CDK-2AF_upregulated
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00040821:Au-NP_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00042274:tbx-2(bx59)_downregulated
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00045960:L1-L4-lethargus_downregulated
WBPaper00045960:L4-lethargus_downregulated
WBPaper00048637:lin-35(n745)_starvation_upregulated
WBPaper00048989:N2_rapamycin_downregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(23_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
[cgc6390]:Cluster_F
[cgc6390]:intrinsic
Interaction (123)
Map_infoMapIIIPosition6.49087
PositivePositive_cloneY47D3AInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00031307
WBPaper00035228
WBPaper00038491
WBPaper00054520
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene