WormBase Tree Display for Gene: WBGene00013106
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| WBGene00013106 | SMap | S_parent | Sequence | Y51H4A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | set-26 | Person_evidence | WBPerson1730 | |||||
| WBPerson268 | |||||||||
| WBPerson632 | |||||||||
| Sequence_name | Y51H4A.12 | ||||||||
| Molecular_name | Y51H4A.12 | ||||||||
| Y51H4A.12.1 | |||||||||
| CE25361 | |||||||||
| Other_name | Y51H4A.m | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y51H4A.12 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | set-26 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 03 May 2007 10:33:07 | WBPerson2970 | Name_change | CGC_name | set-26 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | set | ||||||||
| Allele (204) | |||||||||
| Strain | WBStrain00036807 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Ortholog (24) | |||||||||
| Paralog | WBGene00017482 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00022203 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00012845 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | set-26 encodes a large (1,677-residue) protein with a low-complexity N-terminal region, followed by a PHD-zinc finger and a SET domain; SET-26 has no non-nematode orthologs, but has 96% identity (1616/1679 residues) to its paralog SET-9; unlike its paralog SET-9, SET-26 has no obvious function in RNAi assays. | Paper_evidence | WBPaper00030864 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 11 Oct 2007 00:00:00 | ||||||||
| Automated_description | Enables histone H3K9 methyltransferase activity. Predicted to be involved in chromatin remodeling and methylation. Predicted to be located in nucleus. Expressed in several structures, including germ cell; hypodermis; intestine; muscle cell; and somatic cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y51H4A.12 | |||||||
| Corresponding_CDS_history | Y51H4A.12:wp165 | ||||||||
| Y51H4A.12:wp229 | |||||||||
| Corresponding_transcript | Y51H4A.12.1 | ||||||||
| Other_sequence | CRC03812_1 | ||||||||
| CR04714 | |||||||||
| CBC13023_1 | |||||||||
| CGC00319_1 | |||||||||
| CRC09170_1 | |||||||||
| Associated_feature | WBsf668567 | ||||||||
| WBsf668568 | |||||||||
| WBsf668569 | |||||||||
| WBsf668570 | |||||||||
| WBsf668571 | |||||||||
| WBsf998899 | |||||||||
| WBsf1018891 | |||||||||
| WBsf1018892 | |||||||||
| WBsf1018893 | |||||||||
| Transcription_factor | WBTranscriptionFactor000401 | ||||||||
| Experimental_info | RNAi_result (29) | ||||||||
| Expr_pattern | Expr9864 | ||||||||
| Expr14354 | |||||||||
| Expr14394 | |||||||||
| Expr14395 | |||||||||
| Expr1035816 | |||||||||
| Expr1160611 | |||||||||
| Expr2015771 | |||||||||
| Expr2034004 | |||||||||
| Regulate_expr_cluster | WBPaper00054410:set-26(tm2467)_downregulated | ||||||||
| WBPaper00054410:set-26(tm2467)_upregulated | |||||||||
| Antibody | WBAntibody00002295 | ||||||||
| Microarray_results (11) | |||||||||
| Expression_cluster (93) | |||||||||
| Interaction (14) | |||||||||
| Map_info | Map | IV | Position | 15.1738 | |||||
| Positive | Positive_clone | Y51H4A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (12) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
