WormBase Tree Display for Gene: WBGene00013665
expand all nodes | collapse all nodes | view schema
| WBGene00013665 | SMap | S_parent | Sequence | Y105C5B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | hlh-32 | Person_evidence | WBPerson260 | |||||
| WBPerson346 | |||||||||
| Sequence_name | Y105C5B.29 | ||||||||
| Molecular_name | Y105C5B.29 | ||||||||
| Y105C5B.29.1 | |||||||||
| CE35055 | |||||||||
| Other_name | CELE_Y105C5B.29 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | hlh-32 | ||||||||
| DB_info | Database | AceView | gene | 4Q899 | |||||
| WormQTL | gene | WBGene00013665 | |||||||
| WormFlux | gene | WBGene00013665 | |||||||
| NDB | locus_tag | CELE_Y105C5B.29 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00013665|UniProtKB=Q7YWS9 | |||||||
| family | PTHR19290 | ||||||||
| NCBI | gene | 3565279 | |||||||
| RefSeq | protein | NM_001028259.5 | |||||||
| TREEFAM | TREEFAM_ID | TF322733 | |||||||
| TrEMBL | UniProtAcc | Q7YWS9 | |||||||
| UniProt_GCRP | UniProtAcc | Q7YWS9 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 30 Oct 2007 14:27:24 | WBPerson2970 | Name_change | CGC_name | hlh-32 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | hlh | ||||||||
| Allele (53) | |||||||||
| Strain | WBStrain00051008 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00082662 | ||||||||
| 00082663 | |||||||||
| 00082664 | |||||||||
| 00082665 | |||||||||
| 00082666 | |||||||||
| 00082667 | |||||||||
| 00082668 | |||||||||
| 00120450 | |||||||||
| Ortholog (49) | |||||||||
| Paralog | WBGene00001960 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00001961 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003018 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00003595 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00009540 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000561 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | hlh-32 encodes a basic helix-loop-helix (bHLH) transcription factor similarto the vertebrate Olig2 proteins that play a role in motoneuron andoligodendrocyte development; genetic analyses suggest that, along withhlh-17, hlh-31 and vab-3, hlh-32 may play a redundant role in regulation of ventral cephalic sheath (CEPsh) glia function, as assayed by AWC axonaldefects; an hlh-32::gfp promoter fusion is expressed in expressed in two unidentified head neurons. | Paper_evidence | WBPaper00031917 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 12 Dec 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity and E-box binding activity. Predicted to be involved in neuron differentiation; positive regulation of transcription by RNA polymerase II; and sensory organ development. Predicted to be located in nucleus. Is an ortholog of human BHLHE22 (basic helix-loop-helix family member e22). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y105C5B.29 | |||||||
| Corresponding_transcript | Y105C5B.29.1 | ||||||||
| Other_sequence | FG619636.1 | ||||||||
| DN152901.1 | |||||||||
| HBC15213_1 | |||||||||
| MC05413 | |||||||||
| MCC05460_1 | |||||||||
| JI180177.1 | |||||||||
| Associated_feature | WBsf646586 | ||||||||
| WBsf978898 | |||||||||
| WBsf998819 | |||||||||
| WBsf1018835 | |||||||||
| WBsf229588 | |||||||||
| Transcription_factor | WBTranscriptionFactor000237 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00061130 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00115824 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00061128 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014554 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1017809 | ||||||||
| Expr1158740 | |||||||||
| Expr2012507 | |||||||||
| Expr2030746 | |||||||||
| Drives_construct | WBCnstr00029564 | ||||||||
| Construct_product | WBCnstr00016891 | ||||||||
| WBCnstr00029564 | |||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (73) | |||||||||
| Interaction | WBInteraction000047248 | ||||||||
| WBInteraction000172921 | |||||||||
| WBInteraction000301033 | |||||||||
| WBInteraction000332410 | |||||||||
| WBInteraction000501318 | |||||||||
| WBInteraction000526350 | |||||||||
| WBInteraction000526351 | |||||||||
| WBInteraction000526352 | |||||||||
| Map_info | Map | IV | Position | 14.5564 | Error | 0.000853 | |||
| Positive | Positive_clone | Y105C5B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00031917 | |||||||||
| WBPaper00034761 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
