WormBase Tree Display for Gene: WBGene00014046
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WBGene00014046 | SMap | S_parent | Sequence | ZK666 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | clec-60 | Person_evidence | WBPerson261 | |||||
WBPerson655 | |||||||||
Sequence_name | ZK666.6 | ||||||||
Molecular_name | ZK666.6 | ||||||||
ZK666.6.1 | |||||||||
CE02391 | |||||||||
Other_name | CELE_ZK666.6 | Accession_evidence | NDB | BX284602 | |||||
Public_name | clec-60 | ||||||||
DB_info | Database | AceView | gene | 2K770 | |||||
WormQTL | gene | WBGene00014046 | |||||||
WormFlux | gene | WBGene00014046 | |||||||
NDB | locus_tag | CELE_ZK666.6 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00014046|UniProtKB=Q23564 | |||||||
family | PTHR31024 | ||||||||
NCBI | gene | 191384 | |||||||
RefSeq | protein | NM_063858.4 | |||||||
TREEFAM | TREEFAM_ID | TF317104 | |||||||
TrEMBL | UniProtAcc | Q23564 | |||||||
UniProt_GCRP | UniProtAcc | Q23564 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 28 Sep 2005 17:40:12 | WBPerson2970 | Name_change | CGC_name | clec-60 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | clec | ||||||||
Allele (24) | |||||||||
Strain | WBStrain00004708 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00078945 | ||||||||
Ortholog (60) | |||||||||
Paralog (13) | |||||||||
Structured_description | Concise_description | clec-60 encodes a C-type lectin protein with no obvious non-nematode orthologs; clec-60 appears to play a role in the innate immune respone to some bacterial pathogens, including Microbacterium nematophilum and Salmonella enterica; clec-60 transcription is induced 6.6-fold by infection with M. nematophilum, making it one of the most strongly infection-responsive genes (second only to tts-1); CLEC-60 is expressed throughout the larval intestine, with expression continuing in the adult adult primarily in the posterior intestinal cells int8 and int9; CLEC-60 contains an N-terminal von Willebrand factor type A domain and a C-terminal C-type lectin domain. | Paper_evidence | WBPaper00027722 | |||||
WBPaper00044718 | |||||||||
Person_evidence | WBPerson426 | ||||||||
Curator_confirmed | WBPerson1843 | ||||||||
WBPerson567 | |||||||||
Date_last_updated | 19 Feb 2014 00:00:00 | ||||||||
Automated_description | Involved in defense response to Gram-positive bacterium. Expressed in intestine. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info (4) | |||||||||
Experimental_info | RNAi_result | WBRNAi00078250 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00110396 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00076894 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00110394 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00022114 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00106798 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00038403 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00110395 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00082508 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00059632 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr3949 | ||||||||
Expr12635 | |||||||||
Expr1025412 | |||||||||
Expr1163042 | |||||||||
Expr2010193 | |||||||||
Drives_construct | WBCnstr00011773 | ||||||||
WBCnstr00015098 | |||||||||
WBCnstr00022342 | |||||||||
WBCnstr00029353 | |||||||||
Construct_product | WBCnstr00029353 | ||||||||
Microarray_results (18) | |||||||||
Expression_cluster (316) | |||||||||
Interaction (81) | |||||||||
WBProcess | WBbiopr:00000008 | ||||||||
WBbiopr:00000039 | |||||||||
Map_info | Map | II | Position | 2.80209 | Error | 0.031689 | |||
Positive | Positive_clone | ZK666 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference (33) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |