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WormBase Tree Display for Gene: WBGene00016203

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Name Class

WBGene00016203SMapS_parentSequenceCHROMOSOME_III
IdentityVersion2
NameCGC_nametag-250
Sequence_nameC29E4.5
Molecular_nameC29E4.5a
C29E4.5a.1
CE43801
C29E4.5b
CE43781
C29E4.5b.1
C29E4.5b.2
Other_nameCELE_C29E4.5Accession_evidenceNDBBX284603
Public_nametag-250
DB_infoDatabaseAceViewgene3J8
WormQTLgeneWBGene00016203
WormFluxgeneWBGene00016203
NDBlocus_tagCELE_C29E4.5
PanthergeneCAEEL|WormBase=WBGene00016203|UniProtKB=P34344
familyPTHR22948
NCBIgene176113
RefSeqproteinNM_001026017.5
NM_001392147.1
SwissProtUniProtAccP34344
UniProt_GCRPUniProtAccP34344
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:57WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
222 Apr 2005 11:55:18WBPerson2970Name_changeCGC_nametag-250
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classtag
Allele (83)
StrainWBStrain00036131
RNASeq_FPKM (74)
GO_annotation00041803
00041804
00041805
00041806
00041807
Contained_in_operonCEOP3464
Ortholog (37)
ParalogWBGene00004684Caenorhabditis elegansFrom_analysisPanther
WBGene00009052Caenorhabditis elegansFrom_analysisPanther
WBGene00021419Caenorhabditis elegansFrom_analysisPanther
WBGene00016977Caenorhabditis elegansFrom_analysisPanther
WBGene00017992Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be involved in P granule organization; piRNA processing; and spermatogenesis. Predicted to be located in P granule. Expressed in hypodermis; intestine; neurons; and pharyngeal muscle cell. Is an ortholog of human TDRD15 (tudor domain containing 15).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC29E4.5a
C29E4.5b
Corresponding_CDS_historyC29E4.5:wp142
C29E4.5a:wp203
C29E4.5b:wp203
Corresponding_transcriptC29E4.5a.1
C29E4.5b.1
C29E4.5b.2
Other_sequence (26)
Associated_featureWBsf667115
WBsf993191
WBsf993192
WBsf993193
WBsf993194
WBsf1015337
WBsf1015338
WBsf227050
Experimental_infoRNAi_resultWBRNAi00005417Inferred_automaticallyRNAi_primary
WBRNAi00029311Inferred_automaticallyRNAi_primary
WBRNAi00011325Inferred_automaticallyRNAi_primary
WBRNAi00113516Inferred_automaticallyRNAi_primary
WBRNAi00041451Inferred_automaticallyRNAi_primary
Expr_patternExpr2039
Expr1012123
Expr1036936
Expr1145481
Expr2017248
Expr2035384
Drives_constructWBCnstr00028247
Construct_productWBCnstr00028247
Microarray_results (28)
Expression_clusterWBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00042561:smg-2(RNAi)_upregulated
WBPaper00044736:flat_dev_expression
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045521:Gender_Neutral
WBPaper00045774:clk-1_downregulated
WBPaper00045974:NSM_enriched_totalRNA_RNAseq
WBPaper00048988:neuron_expressed
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049626:UNC-75_target
WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_25C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:mir-34(OverExpression)_vs_N2_regulated_adult_20C
WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051558:fog-2(q71)_regulated
WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058691:cfp-1(tm6369)_downregulated
WBPaper00061203:let-418(n3536)_upregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061340:g2
WBPaper00061340:hyp1V_and_ant_arc_V
WBPaper00061340:hyp1_hyp2
WBPaper00061479:HDA-1_interacting_protein
WBPaper00061527:ldb-1_2877-scd-1_3086
WBPaper00061527:saeg-1_18803-mpz-2_15880
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:etr-1(lq61)_upregulated
WBPaper00064494:postdauer_upregulated_AWA
WBPaper00065373:Cisplatin_downregulated_WT
WBPaper00065373:sek-1(km4)_downregulated_cisplatin
WBPaper00065841:50_0
WBPaper00065841:79_0
cgc4386_cluster_5_5
cgc4489_group_7
WBPaper00025032:cluster_10
WBPaper00025032:cluster_39
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00031003:0hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00034739:N2lessDR1350
WBPaper00034739:N2moreDR1350
WBPaper00035905:FBF-1_Associated
WBPaper00036286:Pattern_H
WBPaper00037695:DD_3-day
WBPaper00037695:WC_5-day
WBPaper00041002:HF_3d_2.0mM_Down
WBPaper00041002:HQ_3d_0.2mM_Down
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00045960:L4-lethargus_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
WBPaper00048989:eat-2(ad465)_upregulated_in-DMSO
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00057098:SiO2-nanoparticles_upregulated
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(101_min)
[cgc5767]:expression_class_SE
[cgc5767]:expression_class_SE_pi(101_min)
InteractionWBInteraction000215105
WBInteraction000345783
WBInteraction000401393
WBInteraction000412064
WBInteraction000416141
WBInteraction000544162
WBInteraction000547391
WBInteraction000575482
Map_infoMapIIIPosition-0.494191Error0.001928
PositivePositive_cloneC29E4Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point5112
4947
Pseudo_map_position
ReferenceWBPaper00065308
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene