WormBase Tree Display for Gene: WBGene00016203
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| WBGene00016203 | SMap | S_parent | Sequence | CHROMOSOME_III | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | tag-250 | |||||||
| Sequence_name | C29E4.5 | ||||||||
| Molecular_name | C29E4.5a | ||||||||
| C29E4.5a.1 | |||||||||
| CE43801 | |||||||||
| C29E4.5b | |||||||||
| CE43781 | |||||||||
| C29E4.5b.1 | |||||||||
| C29E4.5b.2 | |||||||||
| Other_name | CELE_C29E4.5 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | tag-250 | ||||||||
| DB_info | Database | AceView | gene | 3J8 | |||||
| WormQTL | gene | WBGene00016203 | |||||||
| WormFlux | gene | WBGene00016203 | |||||||
| NDB | locus_tag | CELE_C29E4.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00016203|UniProtKB=P34344 | |||||||
| family | PTHR22948 | ||||||||
| NCBI | gene | 176113 | |||||||
| RefSeq | protein | NM_001026017.5 | |||||||
| NM_001392147.1 | |||||||||
| SwissProt | UniProtAcc | P34344 | |||||||
| UniProt_GCRP | UniProtAcc | P34344 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 22 Apr 2005 11:55:18 | WBPerson2970 | Name_change | CGC_name | tag-250 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tag | ||||||||
| Allele (83) | |||||||||
| Strain | WBStrain00036131 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00041803 | ||||||||
| 00041804 | |||||||||
| 00041805 | |||||||||
| 00041806 | |||||||||
| 00041807 | |||||||||
| Contained_in_operon | CEOP3464 | ||||||||
| Ortholog (37) | |||||||||
| Paralog | WBGene00004684 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00009052 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00021419 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00016977 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00017992 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to be involved in P granule organization; piRNA processing; and spermatogenesis. Predicted to be located in P granule. Expressed in hypodermis; intestine; neurons; and pharyngeal muscle cell. Is an ortholog of human TDRD15 (tudor domain containing 15). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C29E4.5a | |||||||
| C29E4.5b | |||||||||
| Corresponding_CDS_history | C29E4.5:wp142 | ||||||||
| C29E4.5a:wp203 | |||||||||
| C29E4.5b:wp203 | |||||||||
| Corresponding_transcript | C29E4.5a.1 | ||||||||
| C29E4.5b.1 | |||||||||
| C29E4.5b.2 | |||||||||
| Other_sequence (26) | |||||||||
| Associated_feature | WBsf667115 | ||||||||
| WBsf993191 | |||||||||
| WBsf993192 | |||||||||
| WBsf993193 | |||||||||
| WBsf993194 | |||||||||
| WBsf1015337 | |||||||||
| WBsf1015338 | |||||||||
| WBsf227050 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00005417 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00029311 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011325 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113516 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041451 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr2039 | ||||||||
| Expr1012123 | |||||||||
| Expr1036936 | |||||||||
| Expr1145481 | |||||||||
| Expr2017248 | |||||||||
| Expr2035384 | |||||||||
| Drives_construct | WBCnstr00028247 | ||||||||
| Construct_product | WBCnstr00028247 | ||||||||
| Microarray_results | SMD_C29E4.5 | ||||||||
| 173750_at | |||||||||
| 175951_s_at | |||||||||
| A_12_P108844 | |||||||||
| A_12_P143710 | |||||||||
| A_12_P143711 | |||||||||
| A_12_P143712 | |||||||||
| Aff_C29E4.5 | |||||||||
| GPL13394_WBGene00016203 | |||||||||
| GPL13914_C29E4.5 | |||||||||
| GPL14144_C29E4.5a_1474-1533_0.937_2_B | |||||||||
| GPL14144_C29E4.5a_1577-1636_0.936_3_C | |||||||||
| GPL14144_C29E4.5a_1845-1904_0.944_1_A | |||||||||
| GPL19516_CGZ0006578 | |||||||||
| GPL19516_CGZ0006579 | |||||||||
| GPL21109_C29E4.5a | |||||||||
| GPL21109_C29E4.5b | |||||||||
| GPL3518_CE29682 | |||||||||
| GPL8304_CE_WBGene00016203_A | |||||||||
| GPL8304_CE_WBGene00016203_C | |||||||||
| GPL8673_C29E4_5aP00741 | |||||||||
| GPL8673_C29E4_5aP01213 | |||||||||
| GPL8673_C29E4_5aP01690 | |||||||||
| GPL8673_C29E4_5bP00237 | |||||||||
| GPL8673_C29E4_5bP00249 | |||||||||
| GPL8673_C29E4_5bP00325 | |||||||||
| GPL9450_C29E4.5 | |||||||||
| cea2.p.58752 | |||||||||
| Expression_cluster (69) | |||||||||
| Interaction | WBInteraction000215105 | ||||||||
| WBInteraction000345783 | |||||||||
| WBInteraction000401393 | |||||||||
| WBInteraction000412064 | |||||||||
| WBInteraction000416141 | |||||||||
| WBInteraction000544162 | |||||||||
| WBInteraction000547391 | |||||||||
| WBInteraction000575482 | |||||||||
| Map_info | Map | III | Position | -0.494191 | Error | 0.001928 | |||
| Positive | Positive_clone | C29E4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5112 | |||||||
| 4947 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00065308 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
