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WormBase Tree Display for Gene: WBGene00016203

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Name Class

WBGene00016203SMapS_parentSequenceCHROMOSOME_III
IdentityVersion2
NameCGC_nametag-250
Sequence_nameC29E4.5
Molecular_nameC29E4.5a
C29E4.5a.1
CE43801
C29E4.5b
CE43781
C29E4.5b.1
C29E4.5b.2
Other_nameCELE_C29E4.5Accession_evidenceNDBBX284603
Public_nametag-250
DB_infoDatabaseAceViewgene3J8
WormQTLgeneWBGene00016203
WormFluxgeneWBGene00016203
NDBlocus_tagCELE_C29E4.5
PanthergeneCAEEL|WormBase=WBGene00016203|UniProtKB=P34344
familyPTHR22948
NCBIgene176113
RefSeqproteinNM_001026017.5
NM_001392147.1
SwissProtUniProtAccP34344
UniProt_GCRPUniProtAccP34344
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:57WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
222 Apr 2005 11:55:18WBPerson2970Name_changeCGC_nametag-250
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classtag
Allele (83)
StrainWBStrain00036131
RNASeq_FPKM (74)
GO_annotation00041803
00041804
00041805
00041806
00041807
Contained_in_operonCEOP3464
OrthologWBGene00033258Caenorhabditis briggsaeFrom_analysisOrthoMCL
Inparanoid_8
WormBase-Compara
WBGene00148394Caenorhabditis brenneriFrom_analysisInparanoid_8
WormBase-Compara
WBGene00183276Caenorhabditis japonicaFrom_analysisInparanoid_8
WBGene00064110Caenorhabditis remaneiFrom_analysisInparanoid_8
WormBase-Compara
WBGene00230609Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g5279Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g1234Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g8024Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g8026Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g5330Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g1307Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g11048Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g11050Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g2507Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g11032Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g20404Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g21904Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g4966Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g1053Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00598.g12628Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-tag-250Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_III.g11505Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_III.g11507Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g12590Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_03453.g30251Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_07983Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_009159Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_009161Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g08186Oscheius tipulaeFrom_analysisWormBase-Compara
Sp34_30045310Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g8255Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00129341Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00248083Onchocerca volvulusFrom_analysisWormBase-Compara
ZFIN:ZDB-GENE-030131-6451Danio rerioFrom_analysisOrthoFinder
PhylomeDB
ZFIN:ZDB-GENE-041014-303Danio rerioFrom_analysisPanther
PhylomeDB
HGNC:45037Homo sapiensFrom_analysisPanther
PhylomeDB
RGD:1306140Rattus norvegicusFrom_analysisPanther
PhylomeDB
ParalogWBGene00004684Caenorhabditis elegansFrom_analysisPanther
WBGene00009052Caenorhabditis elegansFrom_analysisPanther
WBGene00021419Caenorhabditis elegansFrom_analysisPanther
WBGene00016977Caenorhabditis elegansFrom_analysisPanther
WBGene00017992Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be involved in P granule organization; piRNA processing; and spermatogenesis. Predicted to be located in P granule. Expressed in hypodermis; intestine; neurons; and pharyngeal muscle cell. Is an ortholog of human TDRD15 (tudor domain containing 15).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC29E4.5a
C29E4.5b
Corresponding_CDS_historyC29E4.5:wp142
C29E4.5a:wp203
C29E4.5b:wp203
Corresponding_transcriptC29E4.5a.1
C29E4.5b.1
C29E4.5b.2
Other_sequence (26)
Associated_featureWBsf667115
WBsf993191
WBsf993192
WBsf993193
WBsf993194
WBsf1015337
WBsf1015338
WBsf227050
Experimental_infoRNAi_resultWBRNAi00005417Inferred_automaticallyRNAi_primary
WBRNAi00029311Inferred_automaticallyRNAi_primary
WBRNAi00011325Inferred_automaticallyRNAi_primary
WBRNAi00113516Inferred_automaticallyRNAi_primary
WBRNAi00041451Inferred_automaticallyRNAi_primary
Expr_patternExpr2039
Expr1012123
Expr1036936
Expr1145481
Expr2017248
Expr2035384
Drives_constructWBCnstr00028247
Construct_productWBCnstr00028247
Microarray_results (28)
Expression_cluster (69)
InteractionWBInteraction000215105
WBInteraction000345783
WBInteraction000401393
WBInteraction000412064
WBInteraction000416141
WBInteraction000544162
WBInteraction000547391
WBInteraction000575482
Map_infoMapIIIPosition-0.494191Error0.001928
PositivePositive_cloneC29E4Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point5112
4947
Pseudo_map_position
ReferenceWBPaper00065308
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene