WormBase Tree Display for Gene: WBGene00016461

WBGene00016461 SMap: S_parent: Sequence: C35E7
  Identity: Version: 1
    Name: Sequence_name: C35E7.9
      Molecular_name: C35E7.9
        C35E7.9.1
        CE17522
      Other_name: CELE_C35E7.9 Accession_evidence: NDB BX284601
      Public_name: C35E7.9
    DB_info: Database: AceView gene 1L383
        WormQTL gene WBGene00016461
        WormFlux gene WBGene00016461
        NDB locus_tag CELE_C35E7.9
        Panther gene CAEEL|WormBase=WBGene00016461|UniProtKB=O61765
          family PTHR21515
        NCBI gene 172987
        RefSeq protein NM_060423.6
        TREEFAM TREEFAM_ID TF314838
        TrEMBL UniProtAcc O61765
        UniProt_GCRP UniProtAcc O61765
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:57 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (27)
    RNASeq_FPKM (74)
    GO_annotation: 00036260
    Contained_in_operon: CEOP1900
      CEOP1648
    Ortholog (27)
    Paralog: WBGene00009031 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00009470 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00009959 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00010662 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00011151 Caenorhabditis elegans From_analysis: Panther
      WBGene00015979 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00018119 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00018336 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00020987 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00044796 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to be located in cytoskeleton. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C35E7.9
    Corresponding_transcript: C35E7.9.1
    Other_sequence (80)
  Experimental_info: RNAi_result: WBRNAi00029591 Inferred_automatically: RNAi_primary
      WBRNAi00003095 Inferred_automatically: RNAi_primary
      WBRNAi00001676 Inferred_automatically: RNAi_primary
      WBRNAi00042010 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1012607
      Expr1146018
      Expr2001459
      Expr2019682
    Drives_construct: WBCnstr00028049
    Construct_product: WBCnstr00028049
    Microarray_results (18)
    Expression_cluster: WBPaper00029047:atx-3_upregulated
      WBPaper00031070:rrf-3_eri-1_upregulated
      WBPaper00032031:DConiospora_downregulated_cDNA_12h
      WBPaper00032479:CB4856vsN2_LifeStageProfile_Variation
      WBPaper00032528:L3_depleted
      WBPaper00038237:age-1_upregulated_intestine_rescue
      WBPaper00038237:age-1_upregulated_neuron_rescue
      WBPaper00038237:age-1_upregulated_nontransgenic
      WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
      WBPaper00041954:ethanol_upregulated
      WBPaper00042194:nhr-114(RNAi)_upregulated
      WBPaper00044037:eat-2_regulated_nhr-62_dependent
      WBPaper00044037:eat-2_upregulated
      WBPaper00044316:CH3HgCl_7.5uM_upregulated
      WBPaper00044616:alg-3-4_upregulated_gene
      WBPaper00044616:alg-3-4_upregulated_protein
      WBPaper00044736:rising_dev_expression
      WBPaper00044753:ahr-1_downregulated
      WBPaper00044760:germline_specific
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
      WBPaper00045314:S.aureus-induced_hlh-30(tm1978)
      WBPaper00045521:Spermatogenic
      WBPaper00045774:clk-1_upregulated
      WBPaper00045809:rsd-2(yp10)_downregulated
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
      WBPaper00046805:P-granule-RNAi_upregulated_Set1
      WBPaper00048762:FOG-3_associated
      WBPaper00049018:swsn-2.2(RNAi)_upregulated
      WBPaper00049134:hpk-1(pk1393)_upregulated
      WBPaper00049498:npr-1(ur89)_regulated_2
      WBPaper00049920:Glucose-Diet_upregulated_N2
      WBPaper00049942:HeatShock_downregulated_hsf-1(RNAi)
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050231:male_enriched
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00051257:Levamisole_upregulated
      WBPaper00051265:F1_morc-1(tm6048)_upregulated
      WBPaper00051265:F4_hrde-1(tm1200)_upregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053302:alovudine_72h_regulated
      WBPaper00053318:Aging_downregulated_mRNA_N2
      WBPaper00053318:mir-71(n4115)_downregulated_mRNA
      WBPaper00053599:female_vs_male_downregulated
      WBPaper00053771:up_at_24h-NaCl
      WBPaper00053771:up_at_dpy-7(e88)
      WBPaper00053810:isp-1(qm150)_downregulated
      WBPaper00054410:set-9(rw5)_downregulated
      WBPaper00054872:egl-9(sa307)_downregulated
      WBPaper00055013:hmg-3(bar24)_downregulated
      WBPaper00055049:S.gordonii_downregulated
      WBPaper00055060:flr-1(RNAi)_upregulated
      WBPaper00055354:Rapamycin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055354:Rapamycin-Psora_upregulated
      WBPaper00055386:daf-2(e1370)_upregulated
      WBPaper00055386:eat-2(ad465)_upregulated
      WBPaper00055648:sperm_expressed
      WBPaper00055804:FBF-1-FBF-2-associated_spermatogenic-enriched
      WBPaper00055827:pfd-6(gk493446)_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_upregulated_N2
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056167:Cry5B_downregulated
      WBPaper00056290:hsp-6(mg585)_downregulated
      WBPaper00056443:DietaryRestriction_downregulated
      WBPaper00056809:smn-1(ok355)_downregulated
      WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
      WBPaper00057041:spc-1(cas971)_upregulated
      WBPaper00057288:Cold_upregulated_transcript
      WBPaper00058598:mex-3(eu149)_downregulated
      WBPaper00058598:spn-4(tm291)_downregulated
      WBPaper00058691:set-2(bn129)_upregulated
      WBPaper00058711:paraquat_downregulated
      WBPaper00058711:skn-1(lax188)_upregulated
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00059490:dcr-1(m9375)_upregulated
      WBPaper00059567:olrn-1(ums9)_regulated
      WBPaper00059728:5ug_cholesterol_upregulated
      WBPaper00059728:20ug_cholesterol_upregulated
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
      WBPaper00060445:ikb-1(nr2027)_upregulated_L4
      WBPaper00060445:nfki-1(cer1)_ikb-1(nr2027)_upregulated_L4
      WBPaper00060445:nfki-1(cer1)_upregulated_L4
      WBPaper00060683:hlh-11(ko1)_upregulated
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00060921:cat-2(e1112)_downregulated
      WBPaper00061007:HB101_upregulated
      WBPaper00061007:S.aquatilis_upregulated
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061340:ADA_ADE_grandparent
      WBPaper00061340:I5
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061357:mett-10(ok2204)_downregulated_NA22
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
      WBPaper00061479:prg-1(tm872)_upregulated
      WBPaper00061527:F42A9.7-T22B3.3
      WBPaper00061651:Sperm_enriched
      WBPaper00061902:camt-1(ok515)_regulated_RMG
      WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
      WBPaper00062156:jmjd-5(zr1234)_upregulated
      WBPaper00062193:hsf-1(RNAi)_downregulated
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00062456:doxycycline_upregulated_CB4856_transcript
      WBPaper00062669:extracellular-vesicle_protein
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064494:postdauer_downregulated_AWA
      WBPaper00064539:nhr-114(gk849)_downregulated
      WBPaper00064716:paraquat_downregulated
      WBPaper00065029:cadmium_upregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065096:npr-8(ok1439)_upregulated_Day1_25C
      WBPaper00065096:npr-8(ok1439)_upregulated_Day10_20C
      WBPaper00065096:npr-8(ok1439)_upregulated_Day10_25C
      WBPaper00065158:25C_vs_15C_downregulated_AFD
      WBPaper00065158:25C_vs_15C_downregulated_WholeAnimal
      WBPaper00065158:AFD_enriched
      WBPaper00065288:mdt-15(tm2182)_upregulated
      WBPaper00065373:sek-1(km4)_downregulated_Ref
      WBPaper00065841:3_3
      WBPaper00065841:95_0
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066038:mip-1(how5)_upregulated
      WBPaper00066085:hda-3(ok1991)_upregulated
      WBPaper00066110:Cisplatin_upregulated_diploid
      WBPaper00066110:Doxorubicin_upregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066232:ash-2(RNAi)_downregulated_WT
      WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
      cgc4489_group_11
      WBPaper00024393:strongly_regulated_dauer_genes
      WBPaper00029437:rde-4_upregulated
      WBPaper00030985:Enterococcus_faecalis_upregulated
      WBPaper00033101:spr-5_regulated
      WBPaper00034757:up_by_oxidative_stress
      WBPaper00035479:daf-16(RNAi)_upregulated
      WBPaper00035873:dpy-9_regulated
      WBPaper00035873:dpy-10_regulated
      WBPaper00035891:zip-2(RNAi)_downregulated
      WBPaper00036123:Atrazine_regulated
      WBPaper00036286:Pattern_E
      WBPaper00038172:aak-2overexpression_up_regulated
      WBPaper00038172:tax-6null_down_regulated
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00041002:HF_3d_0.2mM_Up
      WBPaper00041002:HF_3d_2.0mM_Down
      WBPaper00041906:I-3690_vs_OP50_3d
      WBPaper00042258:DA1877_upregulated_GravidAdult
      WBPaper00045263:0.1mM-paraquat_downregulated
      WBPaper00045263:isp-1(qm150)_downregulated
      WBPaper00045263:nuo-6(qm200)_downregulated
      WBPaper00045263:ProLongevity-mtROS_downregulated
      WBPaper00045673:colistin_downregulated
      WBPaper00048989:N2_allantoin_downregulated
      WBPaper00051387:Triclosan_downregulated
      [cgc6390]:Cluster_D
      [cgc6390]:spermatogenesis-enriched
    Interaction (42)
  Map_info: Positive: Positive_clone: C35E7 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: I 5.20778
  Reference: WBPaper00031070
  Method: Gene