WormBase Tree Display for Gene: WBGene00016668

WBGene00016668 SMap: S_parent: Sequence: C45G7
  Identity: Version: 2
    Name: CGC_name: ilys-1 Person_evidence: WBPerson2531
      Sequence_name: C45G7.1
      Molecular_name: C45G7.1
        C45G7.1.1
        CE46151
      Other_name: CELE_C45G7.1 Accession_evidence: NDB BX284604
      Public_name: ilys-1
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:57 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 18 May 2007 16:58:23 WBPerson2970 Name_change: CGC_name: ilys-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ilys
    Allele (33)
    RNASeq_FPKM (74)
    GO_annotation: 00038127
      00038128
      00038129
      00038130
      00038131
      00038132
      00038133
      00038134
      00122235
    Ortholog (31)
    Paralog: WBGene00017691 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00016670 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00016669 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00016958 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00020982 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Concise_description: ilys-1 encodes one of five C. elegans invertebrate-type lysozymes; ilys-1 is found in a cluster with ilys-2 and ilys-3 on chromosome IV; however, unlike the four other invertebrate-type lysozymes, ILYS-1 lacks a predicted signal sequence; at the nucleotide level, ilys-1 contains an insertion and a number of nucleotide changes relative to the other ilys genes. Paper_evidence: WBPaper00031802
          Curator_confirmed: WBPerson1843
          Date_last_updated: 18 Nov 2008 00:00:00
      Automated_description: Predicted to enable lysozyme activity. Predicted to be involved in defense response to Gram-positive bacterium. Expressed in intestine; mc1; mc2; pm3; and pm4. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C45G7.1
    Corresponding_CDS_history: C45G7.1:wp227
    Corresponding_transcript: C45G7.1.1
    Other_sequence: MHC03367_1
      Oden_isotig24614
      MH02237
    Associated_feature: WBsf1016906
      WBsf1016907
  Experimental_info: RNAi_result: WBRNAi00011982 Inferred_automatically: RNAi_primary
      WBRNAi00042536 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr13074
      Expr1026830
      Expr1146523
      Expr2012720
      Expr2030956
    Drives_construct: WBCnstr00027903
      WBCnstr00038569
    Construct_product: WBCnstr00027903
    Microarray_results (14)
    Expression_cluster: WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
      WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00053888:drh-3(rrr2)_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00058598:spn-4(tm291)_downregulated
      WBPaper00060871:M.humicola-extract_4h_regulated
      WBPaper00061340:ASG_AWA
      WBPaper00061340:Neuroblast_ASG_AWA
      WBPaper00061527:176662_at-Y53F4B.16
      WBPaper00064532:pals-25(icb98)_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00032165:differentially_expressed_with_age_medoid_2
      WBPaper00048989:eat-2(ad465)_upregulated_in-DMSO
      WBPaper00048989:N2_rapamycin_downregulated
    Interaction (17)
  Map_info: Map: IV Position: -7.33232 Error: 0.019802
    Positive: Positive_clone: C45G7 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00031802
    WBPaper00033984
    WBPaper00043235
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene