WormBase Tree Display for Gene: WBGene00016668
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WBGene00016668 | SMap | S_parent | Sequence | C45G7 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | ilys-1 | Person_evidence | WBPerson2531 | |||
Sequence_name | C45G7.1 | ||||||
Molecular_name | C45G7.1 | ||||||
C45G7.1.1 | |||||||
CE46151 | |||||||
Other_name | CELE_C45G7.1 | Accession_evidence | NDB | BX284604 | |||
Public_name | ilys-1 | ||||||
DB_info | Database (11) | ||||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | ilys | ||||||
Allele (33) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00038127 | ||||||
00038128 | |||||||
00038129 | |||||||
00038130 | |||||||
00038131 | |||||||
00038132 | |||||||
00038133 | |||||||
00038134 | |||||||
00122235 | |||||||
Ortholog (31) | |||||||
Paralog | WBGene00017691 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | |||||||
WBGene00016670 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00016669 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00016958 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00020982 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
Structured_description | Concise_description | ilys-1 encodes one of five C. elegans invertebrate-type lysozymes; ilys-1 is found in a cluster with ilys-2 and ilys-3 on chromosome IV; however, unlike the four other invertebrate-type lysozymes, ILYS-1 lacks a predicted signal sequence; at the nucleotide level, ilys-1 contains an insertion and a number of nucleotide changes relative to the other ilys genes. | Paper_evidence | WBPaper00031802 | |||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 18 Nov 2008 00:00:00 | ||||||
Automated_description | Predicted to enable lysozyme activity. Predicted to be involved in defense response to Gram-positive bacterium. Expressed in intestine; mc1; mc2; pm3; and pm4. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C45G7.1 | |||||
Corresponding_CDS_history | C45G7.1:wp227 | ||||||
Corresponding_transcript | C45G7.1.1 | ||||||
Other_sequence | MHC03367_1 | ||||||
Oden_isotig24614 | |||||||
MH02237 | |||||||
Associated_feature | WBsf1016906 | ||||||
WBsf1016907 | |||||||
Experimental_info | RNAi_result | WBRNAi00011982 | Inferred_automatically | RNAi_primary | |||
WBRNAi00042536 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr13074 | ||||||
Expr1026830 | |||||||
Expr1146523 | |||||||
Expr2012720 | |||||||
Expr2030956 | |||||||
Drives_construct | WBCnstr00027903 | ||||||
WBCnstr00038569 | |||||||
Construct_product | WBCnstr00027903 | ||||||
Microarray_results (14) | |||||||
Expression_cluster (23) | |||||||
Interaction (17) | |||||||
Map_info | Map | IV | Position | -7.33232 | Error | 0.019802 | |
Positive | Positive_clone | C45G7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00031802 | ||||||
WBPaper00033984 | |||||||
WBPaper00043235 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |