WormBase Tree Display for Gene: WBGene00019018
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| WBGene00019018 | SMap | S_parent | Sequence | CHROMOSOME_II | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | abts-3 | Person_evidence | WBPerson2233 | |||||
| Sequence_name | F57F10.1 | ||||||||
| Molecular_name (16) | |||||||||
| Other_name | CELE_F57F10.1 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | abts-3 | ||||||||
| DB_info | Database | AceView | gene | 2G447 | |||||
| WormQTL | gene | WBGene00019018 | |||||||
| WormFlux | gene | WBGene00019018 | |||||||
| NDB | locus_tag | CELE_F57F10.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00019018|UniProtKB=A0A3B1E616 | |||||||
| family | PTHR11453 | ||||||||
| NCBI | gene | 174024 | |||||||
| RefSeq | protein | NM_062827.6 | |||||||
| NM_001368589.3 | |||||||||
| NM_001368590.4 | |||||||||
| NM_001381448.2 | |||||||||
| NM_001381447.1 | |||||||||
| TrEMBL | UniProtAcc | A0A3B1E616 | |||||||
| Q8MQ15 | |||||||||
| A0A3B1E4W4 | |||||||||
| G5EBE4 | |||||||||
| Q3Y415 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A3B1E616 | |||||||
| OMIM | gene | 610206 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 19 Jan 2005 16:30:54 | WBPerson2970 | Name_change | CGC_name | abts-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | abts | ||||||||
| Allele (332) | |||||||||
| Strain | WBStrain00031387 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Ortholog (46) | |||||||||
| Paralog | WBGene00009920 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00009929 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00019844 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | abts-3 encodes an anion transporter; abts-3 promoter gfp fusions are expressed in neurons and hypodermal cells in a pattern coincident with abts-1. | Paper_evidence | WBPaper00025075 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 13 Dec 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable transmembrane transporter activity. Predicted to be involved in monoatomic ion homeostasis and transmembrane transport. Predicted to be located in basolateral plasma membrane. Expressed in hypodermis and neurons. Human ortholog(s) of this gene implicated in Fuchs' endothelial dystrophy; congenital hereditary endothelial dystrophy of cornea; and corneal dystrophy-perceptive deafness syndrome. Is an ortholog of human SLC4A11 (solute carrier family 4 member 11). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0060649 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:16438) | ||||
| DOID:11555 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:16438) | ||||||
| DOID:0111620 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:16438) | ||||||
| Molecular_info | Corresponding_CDS | F57F10.1a | |||||||
| F57F10.1b | |||||||||
| F57F10.1c | |||||||||
| F57F10.1d | |||||||||
| F57F10.1e | |||||||||
| Corresponding_transcript | F57F10.1a.1 | ||||||||
| F57F10.1b.1 | |||||||||
| F57F10.1b.2 | |||||||||
| F57F10.1c.1 | |||||||||
| F57F10.1d.1 | |||||||||
| F57F10.1e.1 | |||||||||
| Other_sequence (27) | |||||||||
| Associated_feature (26) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00015896 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00048875 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr3244 | ||||||||
| Expr1023188 | |||||||||
| Expr1038215 | |||||||||
| Expr1152623 | |||||||||
| Expr2009101 | |||||||||
| Expr2027337 | |||||||||
| Drives_construct | WBCnstr00011247 | ||||||||
| Microarray_results (29) | |||||||||
| Expression_cluster (173) | |||||||||
| Interaction (24) | |||||||||
| Map_info | Map | II | Position | -0.448445 | Error | 0.008859 | |||
| Positive | Positive_clone | F57F10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4907 | |||||||
| 5045 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00025075 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
