WormBase Tree Display for Gene: WBGene00019120
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| WBGene00019120 | SMap | S_parent | Sequence | F59E12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | npl-4.1 | Person_evidence | WBPerson2333 | |||||
| Sequence_name | F59E12.4 | ||||||||
| Molecular_name | F59E12.4a | ||||||||
| F59E12.4a.1 | |||||||||
| CE28572 | |||||||||
| F59E12.4b | |||||||||
| CE28573 | |||||||||
| F59E12.4b.1 | |||||||||
| Other_name | CELE_F59E12.4 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | npl-4.1 | ||||||||
| DB_info | Database | AceView | gene | 2F923 | |||||
| WormQTL | gene | WBGene00019120 | |||||||
| WormFlux | gene | WBGene00019120 | |||||||
| NDB | locus_tag | CELE_F59E12.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00019120|UniProtKB=H2KYU6 | |||||||
| family | PTHR12710 | ||||||||
| NCBI | gene | 173952 | |||||||
| RefSeq | protein | NM_062695.6 | |||||||
| NM_001383846.2 | |||||||||
| SwissProt | UniProtAcc | H2KYU6 | |||||||
| TREEFAM | TREEFAM_ID | TF314173 | |||||||
| UniProt_GCRP | UniProtAcc | H2KYU6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 05 Jan 2006 11:22:20 | WBPerson2970 | Name_change | CGC_name | npl-4.1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | npl | ||||||||
| Allele (11) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (34) | |||||||||
| Paralog | WBGene00008048 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | |||||
| WBGene00019121 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable ubiquitin binding activity and ubiquitin protein ligase binding activity. Involved in positive regulation of protein localization to nucleus. Located in nucleus. Part of VCP-NPL4-UFD1 AAA ATPase complex. Is an ortholog of human NPLOC4 (NPL4 homolog, ubiquitin recognition factor). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F59E12.4a | |||||||
| F59E12.4b | |||||||||
| Corresponding_transcript | F59E12.4a.1 | ||||||||
| F59E12.4b.1 | |||||||||
| Other_sequence (51) | |||||||||
| Experimental_info | RNAi_result (27) | ||||||||
| Expr_pattern | Expr8955 | ||||||||
| Expr1012734 | |||||||||
| Expr1038251 | |||||||||
| Expr1152952 | |||||||||
| Expr2014368 | |||||||||
| Expr2032609 | |||||||||
| Drives_construct | WBCnstr00007881 | ||||||||
| WBCnstr00026049 | |||||||||
| Construct_product | WBCnstr00006165 | ||||||||
| WBCnstr00007881 | |||||||||
| WBCnstr00026049 | |||||||||
| Microarray_results | SMD_F59E12.7 | ||||||||
| 172504_x_at | |||||||||
| 172577_x_at | |||||||||
| A_12_P150550 | |||||||||
| Aff_F59E12.4 | |||||||||
| GPL14144_F59E12.4b_1543-1602_0.959_1_A | |||||||||
| GPL19516_CGZ0025634 | |||||||||
| GPL19516_CGZ0025635 | |||||||||
| GPL21109_F59E12.4a | |||||||||
| Expression_cluster (93) | |||||||||
| Interaction (120) | |||||||||
| WBProcess | WBbiopr:00000076 | ||||||||
| Map_info | Map | II | Position | -1.01082 | Error | 0.002727 | |||
| Positive | Positive_clone | F59E12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00032135 | ||||||||
| WBPaper00035234 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00040279 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061541 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
