WormBase Tree Display for Gene: WBGene00021461
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| WBGene00021461 | SMap | S_parent | Sequence | Y39G10AR | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | nekl-1 | Person_evidence | WBPerson353 | |||||
| Sequence_name | Y39G10AR.3 | ||||||||
| Molecular_name | Y39G10AR.3a | ||||||||
| Y39G10AR.3a.1 | |||||||||
| CE49798 | |||||||||
| Y39G10AR.3b | |||||||||
| CE49838 | |||||||||
| Y39G10AR.3b.1 | |||||||||
| Y39G10AR.3c | |||||||||
| Y39G10AR.3d | |||||||||
| Other_name | CELE_Y39G10AR.3 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | nekl-1 | ||||||||
| DB_info | Database (14) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 29 Nov 2004 15:34:28 | WBPerson2970 | Event | Acquires_merge | WBGene00021462 | ||||
| 3 | 16 Feb 2007 14:39:36 | WBPerson2970 | Name_change | CGC_name | nekl-1 | ||||
| Acquires_merge | WBGene00021462 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nekl | ||||||||
| Allele (387) | |||||||||
| Strain | WBStrain00032153 | ||||||||
| WBStrain00052052 | |||||||||
| WBStrain00052053 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Ortholog (37) | |||||||||
| Paralog | WBGene00017033 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00017578 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00022631 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| WBGene00008956 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00013694 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00020324 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in phosphorylation. Predicted to be located in nucleus. Expressed in amphid neurons and lumbar neurons. Human ortholog(s) of this gene implicated in lethal congenital contracture syndrome; nephronophthisis 9; and renal-hepatic-pancreatic dysplasia. Is an ortholog of human NEK9 (NIMA related kinase 9). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0060558 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18591) | ||||
| DOID:0111120 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:13387) | ||||||
| DOID:0060259 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:13387) | ||||||
| Molecular_info | Corresponding_CDS | Y39G10AR.3a | |||||||
| Y39G10AR.3b | |||||||||
| Corresponding_CDS_history | Y39G10AR.3:wp124 | ||||||||
| Y39G10AR.3:wp127 | |||||||||
| Y39G10AR.3:wp243 | |||||||||
| Corresponding_transcript | Y39G10AR.3c | ||||||||
| Y39G10AR.3d | |||||||||
| Y39G10AR.3a.1 | |||||||||
| Y39G10AR.3b.1 | |||||||||
| Other_sequence (12) | |||||||||
| Associated_feature (14) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00004597 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00056276 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056277 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr12765 | ||||||||
| Expr1025642 | |||||||||
| Expr1039376 | |||||||||
| Expr1159759 | |||||||||
| Expr2013952 | |||||||||
| Expr2032191 | |||||||||
| Drives_construct | WBCnstr00022797 | ||||||||
| Microarray_results (28) | |||||||||
| Expression_cluster (132) | |||||||||
| Map_info | Map | I | Position | -8.92543 | Error | 0.029913 | |||
| Positive | Positive_clone | Y39G10AR | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027258 | ||||||||
| WBPaper00031387 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00049300 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061306 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
