WormBase Tree Display for Gene: WBGene00021586

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WBGene00021586	SMap	S_parent	Sequence	CHROMOSOME_IV
	Identity	Version	4
		Name	CGC_name	clec-75	Person_evidence	WBPerson261
						WBPerson655
			Sequence_name	Y46C8AL.9
			Molecular_name	Y46C8AL.9
				Y46C8AL.9.1
				CE52171
			Other_name	CELE_Y46C8AL.9	Accession_evidence	NDB	BX284604
			Public_name	clec-75
		DB_info	Database	AceView	gene	4E729
				WormQTL	gene	WBGene00021586
				WormFlux	gene	WBGene00021586
				NDB	locus_tag	CELE_Y46C8AL.9
				Panther	gene	CAEEL\|WormBase=WBGene00021586\|UniProtKB=A0A2C9C3D7
					family	PTHR23062
				NCBI	gene	189949
				RefSeq	protein	NM_001356917.3
				TrEMBL	UniProtAcc	A0A2C9C3D7
				UniProt_GCRP	UniProtAcc	A0A2C9C3D7
		Species	Caenorhabditis elegans
		History	Version_change	1	28 May 2004 13:31:04	WBPerson1971	Event	Imported	Initial conversion from CDS class of stlace from WS125
				2	28 Sep 2005 17:40:12	WBPerson2970	Name_change	CGC_name	clec-75
				3	10 Jun 2014 12:12:12	WBPerson1983	Event	Acquires_merge	WBGene00021588
				4	21 Sep 2017 14:34:34	WBPerson4025	Event	Split_into	WBGene00271795
			Acquires_merge	WBGene00021588
			Split_into	WBGene00271795
		Status	Live
	Gene_info	Biotype	SO:0001217
		Gene_class	clec
		Allele (51)
		RNASeq_FPKM (74)
		Ortholog (52)
		Paralog (43)
		Structured_description	Automated_description	Enriched in head mesodermal cell and intestine based on RNA-seq studies. Is affected by several genes including daf-16; daf-2; and glp-1 based on microarray and RNA-seq studies. Is affected by eighteen chemicals including tryptophan; rotenone; and Tunicamycin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: C-type lectin-like/link domain superfamily; Lectin C-type domain; C-type lectin-like; and C-type lectin fold.	Paper_evidence	WBPaper00065943
					Curator_confirmed	WBPerson324
						WBPerson37462
					Inferred_automatically	This description was generated automatically by a script based on data from the WS291 version of WormBase
					Date_last_updated	29 Nov 2023 00:00:00
	Molecular_info	Corresponding_CDS	Y46C8AL.9
		Corresponding_CDS_history	Y46C8AL.9:wp88
			Y46C8AL.9:wp131
			Y46C8AL.9a:wp124
			Y46C8AL.9a:wp156
			Y46C8AL.9a:wp261
			Y46C8AL.9b:wp156
			Y46C8AL.9b:wp261
			Y46C8AL.9c:wp261
			Y46C8AL.9e:wp261
		Corresponding_transcript	Y46C8AL.9.1
		Corresponding_transcript_history	Y46C8AL.9d:wp261
		Other_sequence	CBC04507_1
			MHC11690_1
		Associated_feature	WBsf645897
			WBsf228142
			WBsf228143
	Experimental_info	RNAi_result	WBRNAi00056653	Inferred_automatically	RNAi_primary
			WBRNAi00020636	Inferred_automatically	RNAi_primary
		Expr_pattern	Expr1011611
			Expr1160122
			Expr2010207
			Expr2028448
		Microarray_results	SMD_Y46C8_100.C
			177232_at
			A_12_P112833
			Aff_Y46C8_100.C
			GPL14144_Y46C8AL.9b_712-771_0.882_24_A
			GPL3518_CE32529
			GPL8673_Y46C8AL_9aP00571
			GPL8673_Y46C8AL_9aP01091
			GPL9450_Y46C8AL.9
			cea2.i.30295
		Expression_cluster	WBPaper00032528:L3_depleted
			WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
			WBPaper00037950:all-neurons_L1-larva_expressed
			WBPaper00037950:coelomocytes_L2-larva_expressed
			WBPaper00037950:intestine_L1-larva_expressed
			WBPaper00037950:intestine_L2-larva_expressed
			WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
			WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
			WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
			WBPaper00042194:nhr-114(RNAi)_downregulated
			WBPaper00042194:Tryptophan_upregulated
			WBPaper00042215:wdr-23(tm1817)_upregulated
			WBPaper00042561:smg-2(RNAi)_upregulated
			WBPaper00042561:smgl-2(RNAi)_upregulated
			WBPaper00044426:rotenone_24h_upregulated
			WBPaper00045316:prg-1_upregulated_L4
			WBPaper00045390:tunicamycin_downregulated
			WBPaper00045390:ubc-9(RNAi)_downregulated
			WBPaper00046012:tdp-1(ok803)_upregulated
			WBPaper00046509:lin-35(n745)_upregulated
			WBPaper00047131:daf-2(e1370)_upregulated_hel-1(gk148684)-background
			WBPaper00047131:daf-2(e1370)_upregulated_N2-background
			WBPaper00047132:glp-1(ts)-25C_upregulated
			WBPaper00048988:neuron_expressed
			WBPaper00049018:swsn-2.2(RNAi)_upregulated
			WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
			WBPaper00049942:hsf-1(RNAi)_upregulated
			WBPaper00050370:dpy-21(e428)_L3_upregulated
			WBPaper00050488:adult_vs_dauer_regulated_N2_20C
			WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
			WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
			WBPaper00050712:RC301_vs_DA650_4h-PA_upregulated
			WBPaper00050726:OsmoticStress_regulated_Food
			WBPaper00050726:starvation_regulated_LowSalt
			WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
			WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
			WBPaper00050990:intestine_enriched
			WBPaper00050990:intestine_expressed
			WBPaper00052884:emb-4(hc60)_upregulated
			WBPaper00053184:sma-2(rax5)_upregulated
			WBPaper00053184:sma-4(rax3)_upregulated
			WBPaper00053302:stavudine_24h_regulated
			WBPaper00053308:SMG-2_associated_NMD(-)_upregulated_ClassI
			WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_downregulated
			WBPaper00053606:N2_vs_elt-2(ca15)_downregulated
			WBPaper00053771:up_at_dpy-7(e88)
			WBPaper00053810:daf-2(e1370)_upregulated
			WBPaper00053810:nuo-6(qm200)_upregulated
			WBPaper00054493:hpl-2(tm1489)_downregulated
			WBPaper00055013:spt-16(RNAi)_upregulated
			WBPaper00055354:Psora-Allantoin_downregulated
			WBPaper00055354:Rapamycin-Metformin_downregulated
			WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
			WBPaper00055354:Rapamycin-Rifampicin_downregulated
			WBPaper00055354:Rifampicin-Psora_downregulated
			WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_upregulated
			WBPaper00055941:nuo-6(qm200)_upregulated
			WBPaper00055971:nhl-2(ok818)_20C_downregulated
			WBPaper00055971:nhl-2(ok818)_25C_downregulated
			WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
			WBPaper00056090:E.faecalis_upregulated_N2
			WBPaper00056290:hsp-6(mg585)_upregulated
			WBPaper00056293:rpl-5(0)-rpl-33(0)_upregulated
			WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
			WBPaper00056550:ceh-60(ok1485)_upregulated_AdultDay4
			WBPaper00056809:smn-1(ok355)_upregulated
			WBPaper00056826:hmc_biased
			WBPaper00057041:spc-1(cas971)_downregulated
			WBPaper00057041:unc-70(cas983)_downregulated
			WBPaper00057068:Cadmium_upregulated
			WBPaper00057068:ints-4(RNAi)_upregulated
			WBPaper00057196:raga-1(ok386)_downregulated)
			WBPaper00058598:mex-1(or286)_upregulated
			WBPaper00058598:mex-3(eu149)_upregulated
			WBPaper00058598:spn-4(tm291)_upregulated
			WBPaper00058711:paraquat_downregulated
			WBPaper00058725:sftb-1(cer6)_upregulated
			WBPaper00058725:sftb-1(cer39)_upregulated
			WBPaper00058948:PA14_downregulated
			WBPaper00059117:B.subtilis_upregulated
			WBPaper00059253:stearic-acid_upregulated
			WBPaper00059334:sacy-1(depletion)_regulated
			WBPaper00059421:daf-3(mgDf90)_downregulated
			WBPaper00059754:E.faecalis_OG1RF_upregulated
			WBPaper00060084:cco-1(RNAi)_upregulated_lin-40(yth27)
			WBPaper00060100:SiNP_downregulated_mRNA
			WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
			WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
			WBPaper00060434:pH4.33_vs_pH6.33_downrgulated
			WBPaper00060661:sensory-neuron_depleted
			WBPaper00060764:swsn-1(os22ts)_upregulated
			WBPaper00060886:spr-5(by101);met-2(n4256)_downregulated
			WBPaper00060909:atfs-1(cmh15)_downregulated
			WBPaper00061081:E.faecalis_upregulated_N2
			WBPaper00061081:E.faecalis_upregulated_skpo-1(ok1640)
			WBPaper00061341:28C_48h_upregulated
			WBPaper00061527:srj-42-srw-113
			WBPaper00061636:atracurium_downregulated
			WBPaper00061699:daf-18(ok480)_downregulated
			WBPaper00061753:csr-1(tor159)_upregulated_25C
			WBPaper00061952:daf-18(nr2037)_downregulated
			WBPaper00061952:daf-18(yh1)_downregulated
			WBPaper00062159:hda-2(ok1479)_upregulated
			WBPaper00062167:mbl-1(tm1563)_upregulated
			WBPaper00062325:muscle_depleted_coding-RNA
			WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
			WBPaper00064005:starvation_upregulated_N2_mRNA
			WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
			WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
			WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
			WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
			WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
			WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
			WBPaper00064306:Agaro-oligosaccharides_upregulated
			WBPaper00064661:lpd-3(ok2138)_upregulated
			WBPaper00064716:paraquat_downregulated
			WBPaper00064788:ketamine_upregulated
			WBPaper00065029:cadmium_upregulated
			WBPaper00065578:gcn-1(nc40)_upregulated
			WBPaper00065749:endu-2(tm4977)_upregulated
			WBPaper00065926:pgph-2(overepxreesion)_upregulated
			WBPaper00065984:pals-17(syb3980)_upregulated
			WBPaper00065993:glp-1(e2141)_upregulated
			WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
			WBPaper00066232:ash-2(RNAi)_downregulated_WT
			WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
			WBPaper00035479:daf-16(RNAi)_downregulated
			WBPaper00046548:dafachronic-acid_downregulated
			WBPaper00048989:N2_allantoin_downregulated
		SAGE_tag	SAGE:ccagaagaaa	Strand	Antisense
			SAGE:cacttgtctataatatg	Strand	Sense
				Unambiguously_mapped
			SAGE:cacttgtcta	Strand	Sense
				Unambiguously_mapped
	Map_info	Map	IV	Position	-1.2976	Error	0.01659
		Positive	Positive_clone	Y46C8AL	Inferred_automatically	From sequence, transcript, pseudogene data
		Pseudo_map_position
	Reference	WBPaper00062388
	Remark	Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.	CGC_data_submission
		[140610 pad] Gene was missing Acquires_merge Event history data so inferred from Acquires_merge tag.
	Method	Gene