WormBase Tree Display for Gene: WBGene00021586

WBGene00021586 SMap: S_parent: Sequence: CHROMOSOME_IV
  Identity: Version: 4
    Name: CGC_name: clec-75 Person_evidence: WBPerson261
            WBPerson655
      Sequence_name: Y46C8AL.9
      Molecular_name: Y46C8AL.9
        Y46C8AL.9.1
        CE52171
      Other_name: CELE_Y46C8AL.9 Accession_evidence: NDB BX284604
      Public_name: clec-75
    DB_info: Database: AceView gene 4E729
        WormQTL gene WBGene00021586
        WormFlux gene WBGene00021586
        NDB locus_tag CELE_Y46C8AL.9
        Panther gene CAEEL|WormBase=WBGene00021586|UniProtKB=A0A2C9C3D7
          family PTHR23062
        NCBI gene 189949
        RefSeq protein NM_001356917.3
        TrEMBL UniProtAcc A0A2C9C3D7
        UniProt_GCRP UniProtAcc A0A2C9C3D7
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:04 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 28 Sep 2005 17:40:12 WBPerson2970 Name_change: CGC_name: clec-75
        3 10 Jun 2014 12:12:12 WBPerson1983 Event: Acquires_merge: WBGene00021588
        4 21 Sep 2017 14:34:34 WBPerson4025 Event: Split_into: WBGene00271795
      Acquires_merge: WBGene00021588
      Split_into: WBGene00271795
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: clec
    Allele: WBVar00188131
      WBVar00188132
      WBVar00188133
      WBVar00188134
      WBVar00188135
      WBVar00901873
      WBVar00901874
      WBVar00901875
      WBVar00901876
      WBVar00901877
      WBVar00901878
      WBVar01668669
      WBVar00901879
      WBVar00901880
      WBVar01451968
      WBVar00901881
      WBVar00901882
      WBVar00901883
      WBVar00091097
      WBVar02020460
      WBVar01481712
      WBVar02121200
      WBVar01499790
      WBVar01821281
      WBVar01821282
      WBVar01499633
      WBVar00571821
      WBVar00571822
      WBVar02124584
      WBVar00571823
      WBVar02089989
      WBVar01580946
      WBVar01580947
      WBVar01580948
      WBVar01580949
      WBVar01580950
      WBVar01580951
      WBVar01580952
      WBVar00422365
      WBVar00422366
      WBVar00422367
      WBVar00422368
      WBVar00422369
      WBVar00422370
      WBVar02122589
      WBVar01499127
      WBVar02097941
      WBVar01499128
      WBVar02148216
      WBVar01499143
      WBVar01499144
    RNASeq_FPKM (74)
    Ortholog (52)
    Paralog (43)
    Structured_description: Automated_description: Enriched in head mesodermal cell and intestine based on RNA-seq studies. Is affected by several genes including daf-16; daf-2; and glp-1 based on microarray and RNA-seq studies. Is affected by eighteen chemicals including tryptophan; rotenone; and Tunicamycin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: C-type lectin-like/link domain superfamily; Lectin C-type domain; C-type lectin-like; and C-type lectin fold. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y46C8AL.9
    Corresponding_CDS_history: Y46C8AL.9:wp88
      Y46C8AL.9:wp131
      Y46C8AL.9a:wp124
      Y46C8AL.9a:wp156
      Y46C8AL.9a:wp261
      Y46C8AL.9b:wp156
      Y46C8AL.9b:wp261
      Y46C8AL.9c:wp261
      Y46C8AL.9e:wp261
    Corresponding_transcript: Y46C8AL.9.1
    Corresponding_transcript_history: Y46C8AL.9d:wp261
    Other_sequence: CBC04507_1
      MHC11690_1
    Associated_feature: WBsf645897
      WBsf228142
      WBsf228143
  Experimental_info: RNAi_result: WBRNAi00056653 Inferred_automatically: RNAi_primary
      WBRNAi00020636 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1011611
      Expr1160122
      Expr2010207
      Expr2028448
    Microarray_results: SMD_Y46C8_100.C
      177232_at
      A_12_P112833
      Aff_Y46C8_100.C
      GPL14144_Y46C8AL.9b_712-771_0.882_24_A
      GPL3518_CE32529
      GPL8673_Y46C8AL_9aP00571
      GPL8673_Y46C8AL_9aP01091
      GPL9450_Y46C8AL.9
      cea2.i.30295
    Expression_cluster: WBPaper00032528:L3_depleted
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00042194:nhr-114(RNAi)_downregulated
      WBPaper00042194:Tryptophan_upregulated
      WBPaper00042215:wdr-23(tm1817)_upregulated
      WBPaper00042561:smg-2(RNAi)_upregulated
      WBPaper00042561:smgl-2(RNAi)_upregulated
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00045316:prg-1_upregulated_L4
      WBPaper00045390:tunicamycin_downregulated
      WBPaper00045390:ubc-9(RNAi)_downregulated
      WBPaper00046012:tdp-1(ok803)_upregulated
      WBPaper00046509:lin-35(n745)_upregulated
      WBPaper00047131:daf-2(e1370)_upregulated_hel-1(gk148684)-background
      WBPaper00047131:daf-2(e1370)_upregulated_N2-background
      WBPaper00047132:glp-1(ts)-25C_upregulated
      WBPaper00048988:neuron_expressed
      WBPaper00049018:swsn-2.2(RNAi)_upregulated
      WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050712:RC301_vs_DA650_4h-PA_upregulated
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:starvation_regulated_LowSalt
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050990:intestine_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053308:SMG-2_associated_NMD(-)_upregulated_ClassI
      WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_downregulated
      WBPaper00053606:N2_vs_elt-2(ca15)_downregulated
      WBPaper00053771:up_at_dpy-7(e88)
      WBPaper00053810:daf-2(e1370)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00054493:hpl-2(tm1489)_downregulated
      WBPaper00055013:spt-16(RNAi)_upregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rifampicin-Psora_downregulated
      WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_upregulated
      WBPaper00055941:nuo-6(qm200)_upregulated
      WBPaper00055971:nhl-2(ok818)_20C_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_upregulated_N2
      WBPaper00056290:hsp-6(mg585)_upregulated
      WBPaper00056293:rpl-5(0)-rpl-33(0)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056550:ceh-60(ok1485)_upregulated_AdultDay4
      WBPaper00056809:smn-1(ok355)_upregulated
      WBPaper00056826:hmc_biased
      WBPaper00057041:spc-1(cas971)_downregulated
      WBPaper00057041:unc-70(cas983)_downregulated
      WBPaper00057068:Cadmium_upregulated
      WBPaper00057068:ints-4(RNAi)_upregulated
      WBPaper00057196:raga-1(ok386)_downregulated)
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00058711:paraquat_downregulated
      WBPaper00058725:sftb-1(cer6)_upregulated
      WBPaper00058725:sftb-1(cer39)_upregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059253:stearic-acid_upregulated
      WBPaper00059334:sacy-1(depletion)_regulated
      WBPaper00059421:daf-3(mgDf90)_downregulated
      WBPaper00059754:E.faecalis_OG1RF_upregulated
      WBPaper00060084:cco-1(RNAi)_upregulated_lin-40(yth27)
      WBPaper00060100:SiNP_downregulated_mRNA
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
      WBPaper00060434:pH4.33_vs_pH6.33_downrgulated
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00060764:swsn-1(os22ts)_upregulated
      WBPaper00060886:spr-5(by101);met-2(n4256)_downregulated
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061081:E.faecalis_upregulated_skpo-1(ok1640)
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061527:srj-42-srw-113
      WBPaper00061636:atracurium_downregulated
      WBPaper00061699:daf-18(ok480)_downregulated
      WBPaper00061753:csr-1(tor159)_upregulated_25C
      WBPaper00061952:daf-18(nr2037)_downregulated
      WBPaper00061952:daf-18(yh1)_downregulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062167:mbl-1(tm1563)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
      WBPaper00064005:starvation_upregulated_N2_mRNA
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00064661:lpd-3(ok2138)_upregulated
      WBPaper00064716:paraquat_downregulated
      WBPaper00064788:ketamine_upregulated
      WBPaper00065029:cadmium_upregulated
      WBPaper00065578:gcn-1(nc40)_upregulated
      WBPaper00065749:endu-2(tm4977)_upregulated
      WBPaper00065926:pgph-2(overepxreesion)_upregulated
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
      WBPaper00066232:ash-2(RNAi)_downregulated_WT
      WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
      WBPaper00035479:daf-16(RNAi)_downregulated
      WBPaper00046548:dafachronic-acid_downregulated
      WBPaper00048989:N2_allantoin_downregulated
    SAGE_tag: SAGE:ccagaagaaa Strand: Antisense
      SAGE:cacttgtctataatatg Strand: Sense
        Unambiguously_mapped
      SAGE:cacttgtcta Strand: Sense
        Unambiguously_mapped
  Map_info: Map: IV Position: -1.2976 Error: 0.01659
    Positive: Positive_clone: Y46C8AL Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00062388
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
    [140610 pad] Gene was missing Acquires_merge Event history data so inferred from Acquires_merge tag.
  Method: Gene