WormBase Tree Display for Gene: WBGene00021586
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WBGene00021586 | SMap | S_parent | Sequence | CHROMOSOME_IV | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 4 | |||||||
Name | CGC_name | clec-75 | Person_evidence (2) | ||||||
Sequence_name | Y46C8AL.9 | ||||||||
Molecular_name | Y46C8AL.9 | ||||||||
Y46C8AL.9.1 | |||||||||
CE52171 | |||||||||
Other_name | CELE_Y46C8AL.9 | Accession_evidence | NDB | BX284604 | |||||
Public_name | clec-75 | ||||||||
DB_info | Database | AceView | gene | 4E729 | |||||
WormQTL | gene | WBGene00021586 | |||||||
WormFlux | gene | WBGene00021586 | |||||||
NDB | locus_tag | CELE_Y46C8AL.9 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00021586|UniProtKB=A0A2C9C3D7 | |||||||
family | PTHR23062 | ||||||||
NCBI | gene | 189949 | |||||||
RefSeq | protein | NM_001356917.3 | |||||||
TrEMBL | UniProtAcc | A0A2C9C3D7 | |||||||
UniProt_GCRP | UniProtAcc | A0A2C9C3D7 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 28 Sep 2005 17:40:12 | WBPerson2970 | Name_change | CGC_name | clec-75 | ||||
3 | 10 Jun 2014 12:12:12 | WBPerson1983 | Event | Acquires_merge | WBGene00021588 | ||||
4 | 21 Sep 2017 14:34:34 | WBPerson4025 | Event | Split_into | WBGene00271795 | ||||
Acquires_merge | WBGene00021588 | ||||||||
Split_into | WBGene00271795 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | clec | ||||||||
Allele (51) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (52) | |||||||||
Paralog (43) | |||||||||
Structured_description | Automated_description | Enriched in head mesodermal cell and intestine based on RNA-seq studies. Is affected by several genes including daf-16; daf-2; and glp-1 based on microarray and RNA-seq studies. Is affected by eighteen chemicals including tryptophan; rotenone; and Tunicamycin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: C-type lectin-like/link domain superfamily; Lectin C-type domain; C-type lectin-like; and C-type lectin fold. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y46C8AL.9 | |||||||
Corresponding_CDS_history | Y46C8AL.9:wp88 | ||||||||
Y46C8AL.9:wp131 | |||||||||
Y46C8AL.9a:wp124 | |||||||||
Y46C8AL.9a:wp156 | |||||||||
Y46C8AL.9a:wp261 | |||||||||
Y46C8AL.9b:wp156 | |||||||||
Y46C8AL.9b:wp261 | |||||||||
Y46C8AL.9c:wp261 | |||||||||
Y46C8AL.9e:wp261 | |||||||||
Corresponding_transcript | Y46C8AL.9.1 | ||||||||
Corresponding_transcript_history | Y46C8AL.9d:wp261 | ||||||||
Other_sequence | CBC04507_1 | ||||||||
MHC11690_1 | |||||||||
Associated_feature | WBsf645897 | ||||||||
WBsf228142 | |||||||||
WBsf228143 | |||||||||
Experimental_info | RNAi_result (2) | ||||||||
Expr_pattern | Expr1011611 | ||||||||
Expr1160122 | |||||||||
Expr2010207 | |||||||||
Expr2028448 | |||||||||
Microarray_results | SMD_Y46C8_100.C | ||||||||
177232_at | |||||||||
A_12_P112833 | |||||||||
Aff_Y46C8_100.C | |||||||||
GPL14144_Y46C8AL.9b_712-771_0.882_24_A | |||||||||
GPL3518_CE32529 | |||||||||
GPL8673_Y46C8AL_9aP00571 | |||||||||
GPL8673_Y46C8AL_9aP01091 | |||||||||
GPL9450_Y46C8AL.9 | |||||||||
cea2.i.30295 | |||||||||
Expression_cluster (129) | |||||||||
SAGE_tag | SAGE:ccagaagaaa | Strand | Antisense | ||||||
SAGE:cacttgtctataatatg | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
SAGE:cacttgtcta | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
Map_info | Map | IV | Position | -1.2976 | Error | 0.01659 | |||
Positive | Positive_clone | Y46C8AL | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00062388 | ||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
[140610 pad] Gene was missing Acquires_merge Event history data so inferred from Acquires_merge tag. | |||||||||
Method | Gene |