WormBase Tree Display for Gene: WBGene00021871

WBGene00021871 SMap: S_parent: Sequence: Y54G2A
  Identity: Version: 3
    Name: CGC_name: dml-1 Person_evidence: WBPerson600
      Sequence_name: Y54G2A.5
      Molecular_name: Y54G2A.5a
        Y54G2A.5a.1
        CE48099
        Y54G2A.5b
        CE33889
        Y54G2A.5c
        CE48813
        Y54G2A.5b.1
        Y54G2A.5c.1
      Other_name: CELE_Y54G2A.5 Accession_evidence: NDB BX284604
      Public_name: dml-1
    DB_info: Database: AceView gene 4D655C
            4D655
        WormQTL gene WBGene00021871
        WormFlux gene WBGene00021871
        NDB locus_tag CELE_Y54G2A.5
        NCBI gene 177071
        RefSeq protein NM_001307325.3
            NM_001028334.8
            NM_001028335.5
        TREEFAM TREEFAM_ID TF352921
        TrEMBL UniProtAcc Q8WTL0
            H2L0Q9
            U4PDW4
        UniProt_GCRP UniProtAcc Q8WTL0
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:05 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 05 Jun 2009 11:58:08 WBPerson9133 Name_change: CGC_name: dml-1
        3 21 Dec 2012 17:26:33 WBPerson615 Event: Split_into: WBGene00235102
      Split_into: WBGene00235102
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: dml
    Allele (67)
    RNASeq_FPKM (74)
    Ortholog (13)
    Paralog: WBGene00010779 Caenorhabditis elegans From_analysis: TreeFam
    Structured_description: Automated_description: Enriched in muscle cell based on microarray studies. Is affected by several genes including daf-2; eat-2; and sek-1 based on microarray and RNA-seq studies. Is affected by nine chemicals including rotenone; Rifampin; and allantoin based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y54G2A.5a
      Y54G2A.5b
      Y54G2A.5c
    Corresponding_CDS_history: Y54G2A.5a:wp236
    Corresponding_transcript: Y54G2A.5a.1
      Y54G2A.5b.1
      Y54G2A.5c.1
    Associated_feature: WBsf659820
      WBsf660007
      WBsf660008
      WBsf981701
      WBsf995803
      WBsf995804
      WBsf1016972
      WBsf228066
  Experimental_info: RNAi_result: WBRNAi00000667 Inferred_automatically: RNAi_primary
      WBRNAi00057470 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1014015
      Expr1039605
      Expr1160913
      Expr2010961
      Expr2029200
    Microarray_results (13)
    Expression_cluster: WBPaper00033065:isp-1-1(qm150)_upregulated
      WBPaper00038438:E.faecalis_24hr_downregulated_RNAseq
      WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
      WBPaper00041071:spe-44_downregulated
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044578:reduced-humidity_upregulated_microarray
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:rising_dev_expression
      WBPaper00045420:fertilization_upregulated_protein
      WBPaper00045521:Spermatogenic
      WBPaper00048988:neuron_expressed
      WBPaper00049545:cco-1(RNAi)_downregulated
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
      WBPaper00049626:UNC-75_target
      WBPaper00050193:met-2(n4256)set-25(n5021)_upregulated_L1
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053388:dauer_regulated_Cluster6
      WBPaper00053599:female_vs_male_downregulated
      WBPaper00053810:isp-1(qm150)_downregulated
      WBPaper00055137:S.maltophilia_upregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055386:daf-2(e1370)_upregulated
      WBPaper00055386:eat-2(ad465)_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00055648:sperm_expressed
      WBPaper00055827:pfd-6(gk493446)_downregulated
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056284:ints-6(t1903)_upregulated
      WBPaper00056290:hsp-6(mg585)_downregulated
      WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056868:P.aeruginosa_upregulated_smallRNA
      WBPaper00057254:MWCNT_upregulated_mRNA
      WBPaper00058725:sftb-1(cer6)_upregulated
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
      WBPaper00059471:EGL-43_interacting
      WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061479:mep-1(ne4629)_upregulated
      WBPaper00061479:prg-1(tm872)_upregulated
      WBPaper00061527:F28H1.5-T05D4.5
      WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
      WBPaper00062156:jmjd-5(zr1234)_upregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062456:doxycycline_upregulated_CB4856_transcript
      WBPaper00062669:extracellular-vesicle_protein
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064315:mes-3(bn199)_upregulated_EGCs
      WBPaper00064716:paraquat_downregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065746:eat-2(ad1113)_downregulated
      WBPaper00065841:7_1
      WBPaper00065841:7_2
      WBPaper00065841:7_4
      WBPaper00065841:19_0
      WBPaper00065841:87_0
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00066038:mip-1(how5)_upregulated
      WBPaper00066085:hda-3(ok1991)_upregulated
      WBPaper00066093:E.coli-purE_upregulated
      WBPaper00066110:Cisplatin_upregulated_diploid
      WBPaper00066110:Doxorubicin_upregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066118:cyclobutrifluram_upregulated
      WBPaper00066232:ash-2(RNAi)_downregulated_WT
      WBPaper00031003:0hr_muscle_enriched
      WBPaper00031003:hlh_1_enriched
      WBPaper00031003:total_muscle_enriched
      WBPaper00038172:aak-2overexpression_up_regulated
      WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
      WBPaper00045263:0.1mM-paraquat_downregulated
      WBPaper00045263:isp-1(qm150)_downregulated
      WBPaper00045263:nuo-6(qm200)_downregulated
      WBPaper00045263:ProLongevity-mtROS_downregulated
      WBPaper00045294:0.1uM_DBAA_downregulated
      WBPaper00045673:colistin_downregulated
      WBPaper00046548:dafachronic-acid_upregulated
  Map_info: Map: IV Position: -6.72516 Error: 0.000996
    Positive: Positive_clone: Y54G2A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene