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WormBase Tree Display for Gene: WBGene00021897

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Name Class

WBGene00021897SMapS_parentSequenceY54G2A
IdentityVersion2
NameCGC_nameser-6Person_evidenceWBPerson3917
WBPerson1657
WBPerson32
Sequence_nameY54G2A.35
Molecular_nameY54G2A.35a
Y54G2A.35a.1
CE31653
Y54G2A.35b
CE48534
Y54G2A.35b.1
Other_nameCELE_Y54G2A.35Accession_evidenceNDBBX284604
Public_nameser-6
DB_infoDatabaseAceViewgene4D731
WormQTLgeneWBGene00021897
WormFluxgeneWBGene00021897
NDBlocus_tagCELE_Y54G2A.35
PanthergeneCAEEL|WormBase=WBGene00021897|UniProtKB=Q8MXS7
familyPTHR24247
NCBIgene259560
RefSeqproteinNM_001307333.2
NM_171297.4
TrEMBLUniProtAccU4PLH7
Q8MXS7
UniProt_GCRPUniProtAccQ8MXS7
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:05WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
228 Apr 2008 17:08:00WBPerson2970Name_changeCGC_nameser-6
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classser
Allele (96)
RNASeq_FPKM (74)
GO_annotation (22)
OrthologWBGene00065710Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00073510Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00026229Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00191944Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WBGene00137077Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WBGene00164880Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00224850Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g3986Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g12829Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g5334Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g18862Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP31.g24542Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g6912Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g10447Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP40.g17166Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00105.g4461Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-ser-6Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold539.g3351Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00001.g66Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_04794Caenorhabditis latensFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g13075Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g10366Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g782Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0043800Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g9895Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00215567Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00239822Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00241173Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00276886Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00277840Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00266827Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00292688Trichuris murisFrom_analysisWormBase-Compara
WBGene00297865Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0024944Drosophila melanogasterFrom_analysisOrthoFinder
Panther
PhylomeDB
Paralog (12)
Structured_descriptionConcise_descriptionser-6 encodes a G protein-coupled receptor that is a member of the C. elegans biogenic amine (dopamine, serotonin, octopamine and tyramine) receptor family; in C. elegans, SER-6 functions as part of a signaling pathway that mediates serotonin-induced fat reduction via transcriptional regulation of lipid oxidation genes; a ser-6::GFP promoter fusion is expressed in a subset of head and tail neurons.Paper_evidenceWBPaper00024527
WBPaper00031915
Curator_confirmedWBPerson1843
Date_last_updated05 Jun 2008 00:00:00
Automated_descriptionEnables octopamine receptor activity. Involved in positive regulation of fatty acid beta-oxidation by octopamine signaling pathway. Predicted to be located in dendrite. Expressed in intestine; neurons; and in male.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY54G2A.35a
Y54G2A.35b
Corresponding_transcriptY54G2A.35a.1
Y54G2A.35b.1
Other_sequence (13)
Associated_featureWBsf660009
WBsf660010
WBsf995829
WBsf995830
WBsf995831
WBsf1016986
WBsf1016987
WBsf228072
Experimental_infoRNAi_resultWBRNAi00057468Inferred_automaticallyRNAi_primary
Expr_patternExpr10641
Expr11709
Expr12149
Expr14336
Expr1013777
Expr1160898
Expr2015751
Expr2033984
Drives_constructWBCnstr00017415
WBCnstr00019421
WBCnstr00020287
WBCnstr00024412
Construct_productWBCnstr00017415
WBCnstr00024412
Microarray_results (17)
Expression_cluster (85)
InteractionWBInteraction000520736
WBInteraction000520737
Map_infoMapIVPosition-6.67896Error0.006989
PositivePositive_cloneY54G2AInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (22)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene