Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00023497

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00023497SMapS_parentSequenceCHROMOSOME_X
IdentityVersion2
NameCGC_namelin-15BPerson_evidenceWBPerson261
Sequence_nameZK662.4
Molecular_nameZK662.4
ZK662.4.1
CE15381
ZK662.4.2
Other_namelin-15CGC_data_submission
CELE_ZK662.4Accession_evidenceNDBBX284606
Public_namelin-15B
DB_infoDatabaseAceViewgeneXQ349
WormQTLgeneWBGene00023497
WormFluxgeneWBGene00023497
NDBlocus_tagCELE_ZK662.4
PanthergeneCAEEL|WormBase=WBGene00023497|UniProtKB=Q27395
familyPTHR22716
NCBIgene181662
RefSeqproteinNM_078186.7
SwissProtUniProtAccQ27395
TREEFAMTREEFAM_IDTF317492
UniProt_GCRPUniProtAccQ27395
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:30WBPerson1971EventImportedInitial conversion from geneace
224 Aug 2004 15:59:57WBPerson1971EventSplit_fromWBGene00003004
Split_fromWBGene00003004
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlin
Reference_alleleWBVar00089409
Allele (125)
Legacy_informationn309 : adult hermaphrodite Muv vulva either normal or nonfunctional two to six ventral protrusions. Some animals rupture during L4 molt. Adult males have one to three ventral protrusions rudimentary ectopic hook. ME0. Possibly enhanced phenotype in n309/Df. NA12 (n765ts (wildtype at 15x, Muv at 25x, maternal effect Muv at 20x); n767 (weaker allele wildtype alone Muv in homozygotes with lin-9 lin-35 lin-36 or lin- 37); n744 (weaker allele wildtype alone Muv with lin-8 or lin-38); etc.).
See also e1763, n309, n374, n377, n743, n744, n765, n1139, n1296, n1331
[C.elegansII] n309 : adult hermaphrodite Muv, vulva either normal or nonfunctional, two to six ventral protrusions. Some animals rupture during L4 molt. Adult males have one to three ventral protrusions, rudimentary ectopic hook. ME0. Possibly enhanced phenotype in n309/Df. OA>10: e1763, n765ts (wildtype at 15C, Muv at 25C, maternal effect Muv at 20C); n767 (class A allele, wildtype alone, Muv in homozygotes with lin-9,35,36,37), n744 (class B allele, wildtype alone, Muv with lin-8,38), etc. Cloned: locus encodes two collinear transcripts,B (5') and A (3', SL2 transpliced); encode predicted 1440 aa and 719 aa novel proteins. [Clark et al.1994; Huang et al. 1994; MT; PS]
Strain (191)
RNASeq_FPKM (74)
GO_annotation (14)
Contained_in_operonCEOPX140
OrthologWBGene00034371Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
WormBase-Compara
WBGene00029710Caenorhabditis briggsaeFrom_analysisOrthoMCL
WormBase-Compara
WBGene00064459Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00149049Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00127471Caenorhabditis japonicaFrom_analysisOMA
TreeFam
WBGene00151689Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00194303Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00138732Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00058689Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00064823Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00060787Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00063475Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00123112Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00059673Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00063414Caenorhabditis remaneiFrom_analysisInparanoid_8
WormBase-Compara
WBGene00140586Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00143748Caenorhabditis brenneriFrom_analysisWormBase-Compara
CBOVI.g3374Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP26.g17281Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g17721Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g17983Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g2096Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g2097Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g12942Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g23085Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g13643Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g13753Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g12566Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g10821Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g10822Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g9075Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g23157Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g23317Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g23322Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00355.g9668Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_I.g3052Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_III.g11138Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_X.g25752Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_X.g25753Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g11134Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold629.g8837Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold629.g9847Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01493.g21268Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_02010.g24364Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_04928.g34063Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_05709.g35446Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_06304.g36354Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_01828Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_14441Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_18302Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_19049Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_19367Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_19372Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_20590Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_21513Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_22251Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_007227Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_007388Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_007470Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_008154Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_010930Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_010995Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_025499Caenorhabditis remaneiFrom_analysisWormBase-Compara
Sp34_X0129200Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g20789Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00083705Caenorhabditis remaneiFrom_analysisWormBase-Compara
ParalogWBGene00002148Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00009728Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00009788Caenorhabditis elegansFrom_analysisPanther
WBGene00012524Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00014040Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017606Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017607Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00022067Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionConcise_descriptionlin-15B encodes a novel protein that contains a THAP domain, a zinc-coordinating, site-specific DNA-binding domain; lin-15B was first identified as a class B synMuv gene that acts redundantly with lin-15A to negatively regulate the outcome of Ras signaling during vulval cell fate specification; subsequently, lin-15B has been shown to also negatively regulate progression through the G1 phase of the cell cycle and RNA-mediated interference (RNAi).Paper_evidenceWBPaper00001182
WBPaper00001949
WBPaper00001990
WBPaper00005298
WBPaper00025108
WBPaper00027135
Curator_confirmedWBPerson1843
Date_last_updated03 May 2007 00:00:00
Automated_descriptionPredicted to enable DNA binding activity and metal ion binding activity. Involved in negative regulation of Ras protein signal transduction; negative regulation of vulval development; and regulation of cell fate specification. Expressed in several structures, including anterior gonad arm; oocyte; and somatic cell.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSZK662.4
Corresponding_transcriptZK662.4.1
ZK662.4.2
Other_sequenceCRC03203_1
CR11978
CRC01656_1
CBC11973_1
CR03100
CRC10613_1
CR04582
Associated_featureWBsf978574
WBsf1008320
WBsf1008321
WBsf1008322
WBsf1008323
WBsf1024643
WBsf1024644
WBsf236808
Gene_product_binds (4674)
Transcription_factorWBTranscriptionFactor000008
Experimental_infoRNAi_result (17)
Expr_patternExpr11544
Expr13120
Expr13667
Expr1011641
Expr1040140
Expr1163030
Expr1200043
Expr2013162
Expr2031394
Drives_constructWBCnstr00007736
WBCnstr00023855
Construct_productWBCnstr00007736
WBCnstr00016646
WBCnstr00019445
WBCnstr00019587
WBCnstr00019645
WBCnstr00020631
WBCnstr00021930
WBCnstr00023855
Regulate_expr_clusterWBPaper00038168:lin-15B(n744)_downregulated
WBPaper00038168:lin-15B(n744)_upregulated
WBPaper00062056:lin-15B(n744)_downregulated
WBPaper00062056:lin-15B(n744)_upregulated
WBPaper00062056:lin-15B(we23)_downregulated
WBPaper00062056:lin-15B(we23)_upregulated
Microarray_results (19)
Expression_cluster (155)
Interaction (314)
Map_infoMapXPosition22.9454Error0.00114
Well_ordered
PositivePositive_clonePS#74B3
ZK662Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_data2_point4458
4457
6060
7015
7082
Multi_point4524
Pos_neg_data4461
491
518
519
536
Reference (328)
RemarkTo properly reflect that this locus encodes two distinct products, this gene was created from the former lin-15 gene on the advice of the CGC. [krb 040824]
MethodGene