WormBase Tree Display for Gene: WBGene00025843

WBGene00025843 SMap: S_parent: Sequence: cb25.fpc0058
  Identity: Version: 1
    Name: CGC_name: Cbr-hacl-1 From_analysis: Inferred_from_orthology
      Sequence_name: CBG02874
      Molecular_name: CBG02874
        CBG02874.1
        CBP00867
      Other_name: CBG_02874 Accession_evidence: NDB HE601438
      Public_name: CBG02874
    DB_info: Database: NDB locus_tag CBG_02874
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:55 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 28 Jul 2021 11:12:28 WBPerson1983 Name_change: CGC_name: Cbr-hacl-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: hacl
    Allele: WBVar00141798
    RNASeq_FPKM: WBls:0000002 115.402 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        163.432 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        85.3257 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        97.4492 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        107.118 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        82.2657 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        91.3875 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
      WBls:0000003 49.0523 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        49.6441 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        50.2358 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBls:0000003.control_median
        51.8887 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        56.3779 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 67.5819 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        67.754 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        67.926 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        65.0935 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        66.9715 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        67.0108 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        67.2451 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
      WBls:0000024 (12)
      WBls:0000027 11.194 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        29.0725 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        39.7556 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        79.0004 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        128.8 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
        54.0364 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        62.0167 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
      WBls:0000035 139.248 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 101.381 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        119.385 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        137.389 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        166.942 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        378.001 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        50.9957 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
      WBls:0000041 100.737 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        103.274 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        108.872 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        129.59 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        82.0337 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        92.6021 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        100.397 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        102.315 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        104.384 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        96.4093 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 138.602 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        76.1811 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        77.4382 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        80.4713 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        87.9545 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        92.1294 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        108.603 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        84.2129 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        94.875 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
      WBls:0000101 111.438 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        85.3257 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        105.471 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        84.6123 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
    GO_annotation: 00129254
      00129255
      00129256
    Ortholog (35)
    Paralog: WBGene00026250 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable catalytic activity; magnesium ion binding activity; and thiamine pyrophosphate binding activity. Is an ortholog of C. elegans hacl-1. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG02874
    Corresponding_CDS_history: CBG02874:bp194
      CBG02874:bp255
    Corresponding_transcript: CBG02874.1
    Other_sequence (31)
  Experimental_info: Expr_pattern: Expr1062408
    Microarray_results: GPL8303_CB6_WBGene00025843_A
      GPL8303_CB6_WBGene00025843_B
      GPL14143_CBG02874_1633-1692_0.676_161_C
      GPL14143_CBG02874_1750-1809_0.691_147_B
      GPL14143_CBG02874_1799-1858_0.800_7_A
    Expression_cluster: WBPaper00051425:CB_L1_vs_embryo_upregulated
  Method: Gene