WormBase Tree Display for Gene: WBGene00028713

WBGene00028713 SMap: S_parent: Sequence: cb25.fpc0156
  Identity: Version: 2
    Name: CGC_name: Cbr-ttb-1 From_analysis: Inferred_from_orthology
      Sequence_name: CBG06439
      Molecular_name: CBG06439
        CBG06439.1
        CBP01681
      Other_name: CBG_06439 Accession_evidence: NDB HE601320
      Public_name: Cbr-ttb-1
    DB_info: Database: NDB locus_tag CBG_06439
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:58 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-ttb-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ttb
    RNASeq_FPKM: WBls:0000002 27.6071 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        28.9345 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        28.9666 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        30.3582 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        29.6464 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        32.5371 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        43.2485 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
      WBls:0000003 110.13 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        119.839 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        129.548 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        117.258 From_analysis: RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        118.979 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 67.7235 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        73.6036 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        79.4837 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
            RNASeq.briggsae.WBls:0000004.control_median
        61.5757 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        76.9776 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        80.4779 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        95.6271 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 (12)
      WBls:0000027 1.55695 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        16.7863 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        8.47767 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        8.94031 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        12.632 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        13.4386 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        26.9336 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 17.5943 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 13.1999 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        20.5772 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        22.409 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        23.4851 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        26.393 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        29.4661 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
      WBls:0000041 105.019 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        60.4143 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        63.2992 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        64.0517 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        64.8042 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        73.3842 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        112.194 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        73.813 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        81.4254 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        82.8219 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        29.3871 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        33.6663 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        35.0173 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        36.3054 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        41.9466 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        27.1975 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        29.0222 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        34.3418 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
      WBls:0000101 32.0763 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        40.6993 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        34.2159 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        48.0951 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00132193
      00132194
      00132195
    Ortholog (39)
    Paralog: WBGene00033945 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable TBP-class protein binding activity. Predicted to be involved in transcription preinitiation complex assembly. Is an ortholog of C. elegans ttb-1. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG06439
    Corresponding_CDS_history: CBG06439:bp194
    Corresponding_transcript: CBG06439.1
    Other_sequence (48)
  Experimental_info: Expr_pattern: Expr1069431
    Microarray_results: GPL8303_CB6_WBGene00028713_A
      GPL14143_CBG06439_402-461_0.920_2_C
      GPL14143_CBG06439_573-632_0.896_15_A
      GPL14143_CBG06439_750-809_0.902_11_B
  Method: Gene