WormBase Tree Display for Gene: WBGene00029037

WBGene00029037 SMap: S_parent: Sequence: cb25.fpc0201
  Identity: Version: 4
    Name: CGC_name: Cbr-lin-12.3 From_analysis: Inferred_from_orthology
      Sequence_name: CBG06829
      Molecular_name: CBG06829
        CBG06829.1
        CBP49628
      Other_name: CBG_06829 Accession_evidence: NDB HE601347
      Public_name: Cbr-lin-12.3
    DB_info: Database: NDB locus_tag CBG_06829
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:58 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 01 Oct 2019 10:47:49 WBPerson1983 Name_change: CGC_name: Cbr-lin-12.3
        3 04 Feb 2020 15:43:57 WBPerson1983 Name_change: CGC_name: Removed
        4 04 Jun 2020 14:38:22 WBPerson1983 Name_change: CGC_name: Cbr-lin-12.3
        5 28 May 2021 19:05:20 WBPerson1983 Name_change: CGC_name: Removed
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lin
    Allele: WBVar00140723
      WBVar00140724
      WBVar00140725
      WBVar00140726
      WBVar00140727
      WBVar00140721
      WBVar00140722
    RNASeq_FPKM: WBls:0000002 1.1205 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        1.54254 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        1.56335 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        2.02701 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        0.850254 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        1.33152 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        1.38508 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 27.514 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        29.5709 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        31.6277 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBls:0000003.control_median
        30.7563 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        33.1271 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 12.5921 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        14.4909 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        16.3898 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        12.7257 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        14.0616 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        14.064 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        14.551 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
      WBls:0000024 (12)
      WBls:0000027 0.087755 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        0.391495 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        1.14166 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        2.94573 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        0.934878 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        1.22581 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        1.47826 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 1.43691 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 0.353589 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        2.47496 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        2.70309 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        3.18004 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        3.88513 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        4.09869 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
      WBls:0000041 1.26237 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        1.95454 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        2.12404 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        2.15509 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        2.18614 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        2.24559 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        2.21586 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        2.26444 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        2.81272 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        2.9558 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 0.266119 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        0.276292 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        0.353241 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        0.762102 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        0.271374 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        0.276349 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        0.27663 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 2.02701 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        4.42341 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        2.10033 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        5.55574 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00132495
      00132496
    Ortholog (33)
    Paralog: WBGene00029022 Caenorhabditis briggsae From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00029035 Caenorhabditis briggsae From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00029134 Caenorhabditis briggsae From_analysis: Inparanoid_8
    Structured_description: Automated_description: Predicted to be involved in cell differentiation. Predicted to be located in membrane. Is an ortholog of C. elegans lin-12. In C. elegans, lin-12 is involved in several processes, including egg-laying behavior; nematode larval development; and positive regulation of mesodermal cell fate specification. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG06829
    Corresponding_CDS_history: CBG06829:bp266
    Corresponding_transcript: CBG06829.1
    Other_sequence: Acan_isotig14012
  Experimental_info: Expr_pattern: Expr1054404
      Expr1065837
    Microarray_results: GPL14143_CBG06826_3936-3995_0.898_20_A
      GPL14143_CBG06829_2105-2164_0.897_13_A
      GPL14143_CBG06829_2131-2190_0.891_20_B
    Expression_cluster: WBPaper00059178:Cbr-spr-4(gu163)_upregulated
  Reference: WBPaper00031365
  Remark: [200204 pad] The CGC name Cbr-lin-12.3 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
    [210528 pad] The CGC name Cbr-lin-12.3 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene