WormBase Tree Display for Gene: WBGene00039380

WBGene00039380 SMap: S_parent: Sequence: cb25.fpc4180
  Identity: Version: 2
    Name: CGC_name: Cbr-casc-3 From_analysis: Inferred_from_orthology
      Sequence_name: CBG20393
      Molecular_name: CBG20393
        CBG20393.1
        CBP25930
      Other_name: CBG_20393 Accession_evidence: NDB HE601396
      Public_name: Cbr-casc-3
    DB_info: Database: NDB locus_tag CBG_20393
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:09 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 04 Jun 2020 14:38:21 WBPerson1983 Name_change: CGC_name: Cbr-casc-3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: casc
    Allele (15)
    RNASeq_FPKM: WBls:0000002 33.7212 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        39.561 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        53.691 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        7.91168 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        17.5694 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        28.5652 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        29.6833 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 149.621 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
            RNASeq.briggsae.WBls:0000003.control_median
        152.243 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        154.866 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        109.252 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        137.913 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 92.8769 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        92.9603 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        93.0437 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        100.771 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        104.44 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        97.8146 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        97.9415 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
      WBls:0000024 (12)
      WBls:0000027 25.9788 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        26.2835 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        43.4887 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        9.38313 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        31.7895 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        34.7337 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        48.3074 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 66.004 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 19.7314 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        26.634 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        44.2856 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        45.4579 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        64.2817 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        66.4954 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
      WBls:0000041 14.1193 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        15.3437 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        15.6021 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        15.8335 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        15.8605 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        18.0103 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        14.0947 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        16.4364 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        21.19 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
      WBls:0000063 15.1131 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        15.9128 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        16.8103 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        19.1581 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        19.4136 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        28.5405 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        18.1119 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        20.171 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        25.236 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 28.5405 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        44.52 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        33.3531 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        48.1548 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00142870
      00142871
      00142872
    Ortholog (20)
    Structured_description: Automated_description: Predicted to enable mRNA binding activity. Predicted to be involved in mRNA processing. Predicted to be part of exon-exon junction complex. Is an ortholog of C. elegans casc-3. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG20393
    Corresponding_CDS_history: CBG20393:bp194
    Corresponding_transcript: CBG20393.1
    Other_sequence (27)
  Experimental_info: Expr_pattern: Expr1064867
    Microarray_results: GPL8303_CB6_WBGene00039380_A
      GPL8303_CB6_WBGene00039380_B
      GPL14143_CBG20393_293-352_0.824_49_A
      GPL14143_CBG20393_1232-1291_0.759_120_B
      GPL14143_CBG20393_1828-1887_0.880_19_C
  Method: Gene