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WormBase Tree Display for Gene: WBGene00052252

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Name Class

WBGene00052252SMapS_parentSequenceCrem_Contig5
IdentityVersion3
NameCGC_nameCre-odc-1From_analysisInferred_from_orthology
Sequence_nameCRE27284
Molecular_nameCRE27284
CRE27284.1
RP02412
Other_namecr01.sctg1.wum.140
Public_nameCre-odc-1
SpeciesCaenorhabditis remanei
HistoryVersion_change109 Nov 2007 10:19:25WBPerson1847EventCreated
229 Nov 2007 17:00:48WBPerson2970Name_changeCGC_nameCre-odc-1
303 Jul 2008 11:44:31WBPerson4055EventImportedfrom NGASP
Name_changeSequence_nameCRE27284
Other_namecr01.sctg1.wum.140
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classodc
RNASeq_FPKMWBls:000000410.3152From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
8.12741From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
9.2213From_analysisRNASeq.remanei.WBls:0000004.control_mean
RNASeq.remanei.WBls:0000004.control_median
WBls:0000024 (53)
WBls:000002711.0608From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
16.2766From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
19.7925From_analysisRNASeq.remanei.WBls:0000027.control_median
20.125From_analysisRNASeq.remanei.WBls:0000027.control_mean
23.3085From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
29.854From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
WBls:000003836.7357From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
43.0347From_analysisRNASeq.remanei.WBls:0000038.control_mean
45.4401From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
RNASeq.remanei.WBls:0000038.control_median
46.9284From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
WBls:0000041102.655From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
24.3192From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
27.4689From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
32.9151From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
62.6909From_analysisRNASeq.remanei.WBls:0000041.control_median
63.2552From_analysisRNASeq.remanei.WBls:0000041.control_mean
92.4668From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
99.7063From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
WBls:0000063 (12)
WBls:000010128.6614From_analysisRNASeq.remanei.total_over_all_stages.control_median
54.931From_analysisRNASeq.remanei.total_over_all_stages.control_mean
GO_annotation00147468
00147469
Ortholog (36)
ParalogWBGene00062309Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
GeneACeDB-Compara
WBGene00084832Caenorhabditis remaneiFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable catalytic activity. Predicted to be involved in polyamine biosynthetic process. Is an ortholog of C. elegans odc-1. In C. elegans, odc-1 is involved in putrescine biosynthetic process from ornithine.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCRE27284
Corresponding_transcriptCRE27284.1
Other_sequence (74)
Experimental_infoExpr_patternExpr1095582
Microarray_resultsGPL14146_CRE27284_1074-1133_0.959_1_B
GPL14146_CRE27284_645-704_0.865_32_C
GPL14146_CRE27284_910-969_0.951_3_A
MethodGene