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WormBase Tree Display for Gene: WBGene00052252

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Name Class

WBGene00052252SMapS_parentSequenceCrem_Contig5
IdentityVersion3
NameCGC_nameCre-odc-1From_analysisInferred_from_orthology
Sequence_nameCRE27284
Molecular_nameCRE27284
CRE27284.1
RP02412
Other_namecr01.sctg1.wum.140
Public_nameCre-odc-1
SpeciesCaenorhabditis remanei
HistoryVersion_change109 Nov 2007 10:19:25WBPerson1847EventCreated
229 Nov 2007 17:00:48WBPerson2970Name_changeCGC_nameCre-odc-1
303 Jul 2008 11:44:31WBPerson4055EventImportedfrom NGASP
Name_changeSequence_nameCRE27284
Other_namecr01.sctg1.wum.140
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classodc
RNASeq_FPKMWBls:000000410.3152From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
8.12741From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
9.2213From_analysisRNASeq.remanei.WBls:0000004.control_mean
RNASeq.remanei.WBls:0000004.control_median
WBls:0000024102.248From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510995
103.544From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510993
104.328From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747485
111.062From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510994
116.879From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311799
119.952From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747490
122.934From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511004
136.852From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747489
138.598From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511005
142.978From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747482
158.99From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511017
228.836From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511016
23.3697From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510999
27.7804From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510998
29.6489From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510988
31.2963From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511001
32.1724From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511010
32.3195From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511011
32.5706From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510991
33.6107From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511000
34.3258From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511003
34.3443From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511002
36.4904From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510989
37.9024From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510987
38.1948From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511013
39.2529From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510986
39.7954From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511021
41.1058From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510990
43.2775From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511020
43.9855From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511015
49.1561From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511012
50.3351From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747484
52.6361From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510997
53.6611From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747488
54.8053From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511007
54.9639From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511014
55.5112From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511006
57.731From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510996
63.9591From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747483
66.1403From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747481
69.7277From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311800
70.5908From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747486
74.9803From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747479
77.4426From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747480
78.8053From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511009
79.7142From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511008
84.9634From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747487
91.9969From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311801
94.9472From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311798
95.7449From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511019
95.9514From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510992
96.565From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311802
96.8728From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511018
WBls:000002711.0608From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
16.2766From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
19.7925From_analysisRNASeq.remanei.WBls:0000027.control_median
20.125From_analysisRNASeq.remanei.WBls:0000027.control_mean
23.3085From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
29.854From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
WBls:000003836.7357From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
43.0347From_analysisRNASeq.remanei.WBls:0000038.control_mean
45.4401From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
RNASeq.remanei.WBls:0000038.control_median
46.9284From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
WBls:0000041102.655From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
24.3192From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
27.4689From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
32.9151From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
62.6909From_analysisRNASeq.remanei.WBls:0000041.control_median
63.2552From_analysisRNASeq.remanei.WBls:0000041.control_mean
92.4668From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
99.7063From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
WBls:0000063143.486From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
143.715From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
144.656From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
145.407From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
146.809From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
18.2166From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
20.838From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
21.8416From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
25.8357From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
82.0629From_analysisRNASeq.remanei.WBls:0000063.control_mean
84.6609From_analysisRNASeq.remanei.WBls:0000063.control_median
9.82416From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
WBls:000010128.6614From_analysisRNASeq.remanei.total_over_all_stages.control_median
54.931From_analysisRNASeq.remanei.total_over_all_stages.control_mean
GO_annotation00147468
00147469
OrthologWBGene00003844Caenorhabditis elegansFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00038323Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00148342Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00194451Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00129265Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00211659Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00102629Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00105040Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00115952Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00280493Pristionchus pacificusFrom_analysisWormBase-Compara
CBOVI.g2260Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g8138Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g3331Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g8817Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g19392Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g5593Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g19709Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g10858Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g1181Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g17808Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g20702Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g26432Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g26433Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g21530Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_23791.g27074Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-odc-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold556.g3751Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00905.g16629Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_15642Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_018014Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g09344Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g840Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_50223000Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g14544Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00255757Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00290103Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00062309Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
GeneACeDB-Compara
WBGene00084832Caenorhabditis remaneiFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable catalytic activity. Predicted to be involved in polyamine biosynthetic process. Is an ortholog of C. elegans odc-1. In C. elegans, odc-1 is involved in putrescine biosynthetic process from ornithine.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCRE27284
Corresponding_transcriptCRE27284.1
Other_sequenceHCC00162_1
ACC32511_1
BG734449.1
FC810195.1
EX015157.1
XI01320
FC814175.1
Tcol_isotig13868
MA02567
XIC03281_1
FC815203.1
Hbac_isotig03407
SRC00596_1
FC809848.1
Tcol_isotig11885
Oden_isotig26963
Oden_isotig05408
Acan_isotig03741
Tcir_isotig12256
CRC03537_1
Oden_isotig05411
JI168658.1
SRC07333_1
Oden_isotig05405
ES880428.1
Name_isotig05626
EX555667.1
JI166153.1
FC809849.1
MAC01851_1
FC809870.1
PT02953
EX555115.1
HCC00161_1
DW718293.1
ES411894.1
ACC04099_1
JO474320.1
Name_isotig03136
Oden_isotig05406
Tcol_isotig11884
RSC00632_1
XI01173
Acan_isotig03742
X82199.1
Oden_isotig05409
SR03099
AIC00004_1
JO469001.1
Oden_isotig05410
CR12106
Dviv_isotig17596
HC05788
HC05787
Hbac_isotig03707
JI166576.1
HBC17413_1
TDC02267_1
PPC07222_1
HBC27913_1
Dviv_isotig17597
TLC00177_1
Oden_isotig22913
FC815227.1
EH005612.1
CBC06549_1
JO468885.1
EX559831.1
RS10745
BUC02113_1
Acan_isotig15583
XIC01853_1
FC815572.1
EX555295.1
Experimental_infoExpr_patternExpr1095582
Microarray_resultsGPL14146_CRE27284_1074-1133_0.959_1_B
GPL14146_CRE27284_645-704_0.865_32_C
GPL14146_CRE27284_910-969_0.951_3_A
MethodGene