WormBase Tree Display for Gene: WBGene00055584

WBGene00055584 SMap: S_parent: Sequence: Crem_Contig12
  Identity: Version: 9
    Name: CGC_name: Cre-polq-1.1 From_analysis: Inferred_from_orthology
      Sequence_name: CRE04522
      Molecular_name: CRE04522
        CRE04522.1
        RP40733
      Other_name: cr01.sctg5.wum.300
      Public_name: Cre-polq-1.1
    Species: Caenorhabditis remanei
    History: Version_change: 1 09 Nov 2007 10:19:26 WBPerson1847 Event: Created
        2 03 Jul 2008 11:44:57 WBPerson4055 Event: Imported: from NGASP
              Name_change: Sequence_name: CRE04522
                Other_name: cr01.sctg5.wum.300
        3 20 Mar 2018 10:26:12 WBPerson4025 Name_change: CGC_name: Cre-polq-1.1
        4 08 Feb 2019 15:42:29 WBPerson1983 Name_change: CGC_name: Removed
        5 08 May 2019 10:09:27 WBPerson1983 Name_change: CGC_name: Cre-polq-1.1
        6 01 Oct 2019 10:47:49 WBPerson1983 Name_change: CGC_name: Removed
        7 04 Jun 2020 14:38:21 WBPerson1983 Name_change: CGC_name: Cre-polq-1.1
        8 28 May 2021 19:05:21 WBPerson1983 Name_change: CGC_name: Removed
        9 28 Jul 2021 11:12:29 WBPerson1983 Name_change: CGC_name: Cre-polq-1.1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: polq
    RNASeq_FPKM: WBls:0000004 8.55975 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
        8.85966 From_analysis: RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
        9.15956 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
      WBls:0000024 (53)
      WBls:0000027 0.163749 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
        3.55993 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
        3.70023 From_analysis: RNASeq.remanei.WBls:0000027.control_mean
        4.46238 From_analysis: RNASeq.remanei.WBls:0000027.control_median
        5.36483 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
        5.71242 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
      WBls:0000038 1.99629 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
        2.32132 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
            RNASeq.remanei.WBls:0000038.control_median
        2.36254 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
        2.77002 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
      WBls:0000041 13.0686 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
        13.7722 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
        16.6143 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
        4.41806 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        5.91747 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
        6.03885 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
        9.55373 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        9.97158 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
      WBls:0000063 (12)
      WBls:0000101 3.57809 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
        4.79147 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
    GO_annotation: 00151055
      00151056
    Ortholog (29)
    Paralog: WBGene00055548 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00055586 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00059583 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00062538 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00062663 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00064897 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00065562 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00076409 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00077051 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00055588 Caenorhabditis remanei From_analysis: GeneACeDB-Compara
    Structured_description: Automated_description: Predicted to enable ATP binding activity and nucleic acid binding activity. Is an ortholog of C. elegans polq-1. In C. elegans, polq-1 is involved in base-excision repair, gap-filling and cellular response to ionizing radiation. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CRE04522
    Corresponding_transcript: CRE04522.1
    Other_sequence: MA00872
      Dviv_isotig29890
      JI175405.1
  Experimental_info: Expr_pattern: Expr1115368
    Microarray_results: GPL14146_CRE04522_977-1036_0.951_2_A
  Remark: [190208 pad] The CGC name Cre-polq-1.1 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
    [191001 pad] The CGC name Cre-polq-1.1 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
    [210528 pad] The CGC name Cre-polq-1.1 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene