WormBase Tree Display for Gene: WBGene00093809
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| WBGene00093809 | SMap | S_parent | Sequence | PPA_ChrIV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 6 | |||||||
| Name | CGC_name | Ppa-emr-1 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA04255 | ||||||||
| Molecular_name | PPA04255 | ||||||||
| PPA04255.1 | |||||||||
| PP51174 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000060676 | ||||||||
| UMM-S283-12.16 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-emr-1 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:04 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 20 Mar 2018 10:26:11 | WBPerson4025 | Name_change | CGC_name | Ppa-lem-2 | ||||
| 3 | 08 Feb 2019 15:42:28 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 4 | 08 May 2019 10:09:25 | WBPerson1983 | Name_change | CGC_name | Ppa-lem-2 | ||||
| 5 | 28 May 2021 19:05:20 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 6 | 28 Jul 2021 11:12:29 | WBPerson1983 | Name_change | CGC_name | Ppa-emr-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | emr | ||||||||
| RNASeq_FPKM | WBls:0000032 | 2.03843 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 2.03843 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| 21.6668 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| 7.90174 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| Ortholog | WBGene00040819 | Caenorhabditis briggsae | From_analysis | WormBase-Compara | |||||
| WBGene00001309 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Cni-emr-1 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
| chrI_pilon.g255 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Is predicted to encode a protein with the following domains: Nucleotide-binding alpha-beta plait domain superfamily; LEM/LEM-like domain superfamily; LEM domain; and MAN1, winged-helix domain. Is an ortholog of C. elegans emr-1. In C. elegans, emr-1 is involved in several processes, including mitotic cytokinesis; nuclear envelope organization; and response to X-ray. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA04255 | |||||||
| Corresponding_transcript | PPA04255.1 | ||||||||
| Other_sequence (45) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_1418 | |||||||
| GPL14372_Probes_1419 | |||||||||
| GPL14372_Probes_1420 | |||||||||
| GPL14372_Probes_1421 | |||||||||
| GPL14372_Probes_37705 | |||||||||
| GPL14372_Probes_37710 | |||||||||
| GPL14372_Probes_37711 | |||||||||
| GPL14372_Probes_37712 | |||||||||
| Expression_cluster | WBPaper00041466:PP_germline-ablation_regulated | ||||||||
| Remark | [190208 pad] The CGC name Ppa-lem-2 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-lem-2 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
