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WormBase Tree Display for Gene: WBGene00099475

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Name Class

WBGene00099475SMapS_parentSequencePPA_ChrII
IdentityVersion12
NameSequence_namePPA09921
Molecular_namePPA09921
PPA09921.1
PP54333
Other_nameGENEPREDICTION_SNAP300000066456
GENEPREDICTION_SNAP300000082026
GENEPREDICTION_SNAP300000082027
GENEPREDICTION_SNAP300000082028
GENEPREDICTION_SNAP300000082029
GENEPREDICTION_SNAP300000082030
GENEPREDICTION_SNAP300000082031
GENEPREDICTION_SNAP300000082032
UMM-S498-0.87Person_evidenceWBPerson606
Ppa-tag-297Inferred_automaticallyfrom gene merge
Public_namePPA09921
SpeciesPristionchus pacificus
HistoryVersion_change (12)
Acquires_mergeWBGene00114735
WBGene00114736
WBGene00114738
WBGene00114733
WBGene00114732
WBGene00114734
WBGene00114737
WBGene00204713
WBGene00205356
WBGene00206184
StatusLive
Gene_infoBiotypeSO:0001217
RNASeq_FPKMWBls:00000328.16317From_analysisRNASeq.pristionchus.WBls:0000032.control_mean
RNASeq.pristionchus.WBls:0000032.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001014.07312From_analysisRNASeq.pristionchus.total_over_all_stages.control_median
RNASeq.pristionchus.WBls:0000101.control_mean
RNASeq.pristionchus.WBls:0000101.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
4.07876From_analysisRNASeq.pristionchus.total_over_all_stages.control_mean
OrthologWBGene00006787Caenorhabditis elegansFrom_analysisInparanoid_8
WormBase-Compara
WBGene00007999Caenorhabditis elegansFrom_analysisOMA
Inparanoid_8
WBGene00032250Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WBGene00032251Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00062211Caenorhabditis remaneiFrom_analysisInparanoid_8
WormBase-Compara
WBGene00062212Caenorhabditis remaneiFrom_analysisOMA
Inparanoid_8
WBGene00145079Caenorhabditis brenneriFrom_analysisOMA
WormBase-Compara
WBGene00136945Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00157016Caenorhabditis brenneriFrom_analysisOMA
Inparanoid_8
WBGene00129319Caenorhabditis japonicaFrom_analysisOMA
Inparanoid_8
WBGene00123054Caenorhabditis japonicaFrom_analysisInparanoid_8
WBGene00228755Brugia malayiFrom_analysisWormBase-Compara
WBGene00246876Onchocerca volvulusFrom_analysisWormBase-Compara
CBOVI.g12389Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP26.g4151Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g8092Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g20002Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g27330Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g27331Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g4962Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g4963Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g4964Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g8473Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g10522Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g20131Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g21168Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g12078Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_19196.g26177Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-unc-52Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g20229Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold630.g20230Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold630.g20231Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_03948.g31682Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_22569Caenorhabditis latensFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g12787Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g4559Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20161610Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g6587Caenorhabditis elegansFrom_analysisWormBase-Compara
chrII_pilon.g6588Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00267333Strongyloides rattiFrom_analysisWormBase-Compara
ParalogWBGene00095695Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00098403Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00104946Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00109058Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00113122Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00276112Pristionchus pacificusFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionEnriched in intestine based on RNA-seq studies. Is predicted to encode a protein with the following domains: Immunoglobulin I-set domain; Immunoglobulin-like domain superfamily; EGF-like domain; Laminin EGF domain; Laminin-type EGF domain; Immunoglobulin subtype 2; Concanavalin A-like lectin/glucanase domain superfamily; Low-density lipoprotein (LDL) receptor class A repeat; Immunoglobulin I-set; Immunoglobulin-like domain; Laminin IV; Immunoglobulin domain; LDL receptor-like superfamily; Laminin G domain; Laminin B (Domain IV); Immunoglobulin-like fold; Growth factor receptor cysteine-rich domain superfamily; Low-density lipoprotein receptor domain class A; and Immunoglobulin subtype. Is an ortholog of C. elegans tag-297 and unc-52. In C. elegans, unc-52 is involved in several processes, including hemidesmosome assembly; muscle cell cellular homeostasis; and muscle structure development.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSPPA09921
Corresponding_transcriptPPA09921.1
Other_sequence (124)
Experimental_infoMicroarray_results (34)
Expression_clusterWBPaper00041472:Phosphorylated_protein
WBPaper00049334:PE_intestine_enriched
WBPaper00050265:C.albidus_vs_OP50_downregulated
WBPaper00050265:C.albidus_vs_OP50_upregulated
WBPaper00050265:C.curvatus_vs_OP50_downregulated
WBPaper00041207:PP_dauer_down
MethodGene