WormBase Tree Display for Gene: WBGene00108055
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| WBGene00108055 | SMap | S_parent | Sequence | PPA_ChrII | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 9 | |||||||
| Name | CGC_name | Ppa-stc-1 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA18501 | ||||||||
| Molecular_name | PPA18501 | ||||||||
| PPA18501.1 | |||||||||
| PP64068 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000075323 | ||||||||
| UMM-S245-13.2 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-stc-1 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:05 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 18 Nov 2010 11:54:45 | WBPerson2970 | Name_change | CGC_name | Ppa-sulp-6 | ||||
| 3 | 08 Feb 2019 15:42:29 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 4 | 08 May 2019 10:09:24 | WBPerson1983 | Name_change | CGC_name | Ppa-sulp-6 | ||||
| 5 | 27 Nov 2019 12:48:15 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 6 | 04 Feb 2020 15:43:56 | WBPerson1983 | Name_change | CGC_name | Ppa-stc-1 | ||||
| 7 | 04 Jun 2020 14:38:21 | WBPerson1983 | Name_change | CGC_name | Ppa-sulp-6 | ||||
| Other_name | Ppa-stc-1 | ||||||||
| 8 | 28 May 2021 19:05:21 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 9 | 28 Jul 2021 11:12:29 | WBPerson1983 | Name_change | CGC_name | Ppa-stc-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | stc | ||||||||
| RNASeq_FPKM | WBls:0000032 | 0.825928 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 0.825928 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| 1.90091 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| 4.87679 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| GO_annotation | 00181578 | ||||||||
| 00181579 | |||||||||
| 00181580 | |||||||||
| 00181581 | |||||||||
| Ortholog (33) | |||||||||
| Paralog (20) | |||||||||
| Structured_description | Automated_description | Predicted to enable ATP binding activity and ATP-dependent protein folding chaperone. Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans stc-1. In C. elegans, stc-1 is involved in IRE1-mediated unfolded protein response. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA18501 | |||||||
| Corresponding_transcript | PPA18501.1 | ||||||||
| Other_sequence (65) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_67800 | |||||||
| GPL14372_Probes_67801 | |||||||||
| GPL14372_Probes_67803 | |||||||||
| GPL14372_Probes_67805 | |||||||||
| Expression_cluster | WBPaper00041466:PP_germline-ablation_regulated | ||||||||
| Remark | [190208 pad] The CGC name Ppa-sulp-6 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [191127 pad] The CGC name Ppa-sulp-6 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| [210528 pad] The CGC name Ppa-sulp-6 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Removed duplicate Other_name Ppa-stc-1 | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
