WormBase Tree Display for Gene: WBGene00109931
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| WBGene00109931 | SMap | S_parent | Sequence | PPA_ChrX | ||
|---|---|---|---|---|---|---|
| Identity | Version | 12 | ||||
| Name | CGC_name | Ppa-lron-1 | From_analysis | Inferred_from_orthology | ||
| Sequence_name | PPA20377 | |||||
| Molecular_name | PPA20377 | |||||
| PPA20377.1 | ||||||
| PP75424 | ||||||
| Other_name | GENEPREDICTION_SNAP300000077187 | |||||
| GENEPREDICTION_SNAP300000077188 | ||||||
| GENEPREDICTION_SNAP300000077189 | ||||||
| Ppa-sym-5 | ||||||
| GENEPREDICTION_SNAP300000077190 | ||||||
| UMA-S2857-8.0 | Person_evidence | WBPerson606 | ||||
| Public_name | Ppa-lron-1 | |||||
| Species | Pristionchus pacificus | |||||
| History | Version_change (12) | |||||
| Acquires_merge | WBGene00109934 | |||||
| WBGene00109932 | ||||||
| WBGene00109933 | ||||||
| Split_into | WBGene00305037 | |||||
| Status | Live | |||||
| Gene_info | Biotype | SO:0001217 | ||||
| Gene_class | lron | |||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | ||
| RNASeq.pristionchus.WBls:0000032.control_median | ||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||||||
| WBls:0000101 | 0.76161 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||
| 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||
| 2.28483 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | ||||
| RNASeq.pristionchus.WBls:0000101.control_median | ||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | ||||||
| Ortholog (27) | ||||||
| Paralog | WBGene00104920 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||
| WBGene00110460 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||
| WBGene00112632 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||
| WBGene00278287 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||
| WBGene00278617 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||
| WBGene00305037 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||
| WBGene00305038 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||
| Structured_description | Automated_description | Is predicted to encode a protein with the following domains: BspA type Leucine rich repeat region; Leucine-rich repeat, typical subtype; Leucine-rich repeat; BspA type Leucine rich repeat region (6 copies); Leucine-rich repeat domain superfamily; Cysteine-rich flanking region, C-terminal; and Leucine rich repeat. Is an ortholog of C. elegans lron-1. | Paper_evidence | WBPaper00065943 | ||
| Curator_confirmed | WBPerson324 | |||||
| WBPerson37462 | ||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||
| Molecular_info | Corresponding_CDS | PPA20377 | ||||
| Corresponding_CDS_history | PPA20377:pp273 | |||||
| Corresponding_transcript | PPA20377.1 | |||||
| Remark | [180319 gw3] The CGC name Ppa-lron-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson4025 | |||
| [191127 pad] The CGC name Ppa-let-4 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||
| [210528 pad] The CGC name Ppa-lron-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||
| Method | Gene |
