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WormBase Tree Display for Gene: WBGene00109931

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Name Class

WBGene00109931SMapS_parentSequencePPA_ChrX
IdentityVersion12
NameCGC_namePpa-lron-1From_analysisInferred_from_orthology
Sequence_namePPA20377
Molecular_namePPA20377
PPA20377.1
PP75424
Other_nameGENEPREDICTION_SNAP300000077187
GENEPREDICTION_SNAP300000077188
GENEPREDICTION_SNAP300000077189
Ppa-sym-5
GENEPREDICTION_SNAP300000077190
UMA-S2857-8.0Person_evidenceWBPerson606
Public_namePpa-lron-1
SpeciesPristionchus pacificus
HistoryVersion_change (12)
Acquires_mergeWBGene00109934
WBGene00109932
WBGene00109933
Split_intoWBGene00305037
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlron
RNASeq_FPKMWBls:00000320From_analysisRNASeq.pristionchus.WBls:0000032.control_mean
RNASeq.pristionchus.WBls:0000032.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
WBls:00001010.76161From_analysisRNASeq.pristionchus.total_over_all_stages.control_mean
0From_analysisRNASeq.pristionchus.total_over_all_stages.control_median
2.28483From_analysisRNASeq.pristionchus.WBls:0000101.control_mean
RNASeq.pristionchus.WBls:0000101.control_median
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
OrthologWBGene00002282Caenorhabditis elegansFrom_analysisInparanoid_8
Inparanoid_7
WBGene00008093Caenorhabditis elegansFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00029553Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00029554Caenorhabditis briggsaeFrom_analysisOMA
WBGene00058516Caenorhabditis remaneiFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00058517Caenorhabditis remaneiFrom_analysisOMA
WBGene00157807Caenorhabditis brenneriFrom_analysisOMA
WBGene00139456Caenorhabditis brenneriFrom_analysisOMA
Inparanoid_8
WormBase-Compara
CSP21.g5556Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g7964Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP31.g25105Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP38.g19528Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP40.g9467Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00770.g14019Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-lron-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g10069Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold629.g10070Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00882.g16423Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_01666Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_025672Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g07125Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g22485Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_X0144720Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g20614Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00265873Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00299561Trichuris murisFrom_analysisWormBase-Compara
WBGene00302431Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00104920Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00110460Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00112632Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00278287Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00278617Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00305037Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00305038Pristionchus pacificusFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: BspA type Leucine rich repeat region; Leucine-rich repeat, typical subtype; Leucine-rich repeat; BspA type Leucine rich repeat region (6 copies); Leucine-rich repeat domain superfamily; Cysteine-rich flanking region, C-terminal; and Leucine rich repeat. Is an ortholog of C. elegans lron-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSPPA20377
Corresponding_CDS_historyPPA20377:pp273
Corresponding_transcriptPPA20377.1
Remark[180319 gw3] The CGC name Ppa-lron-1 was deleted as there was no evidence to support it.Curator_confirmedWBPerson4025
[191127 pad] The CGC name Ppa-let-4 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
[210528 pad] The CGC name Ppa-lron-1 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene