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WormBase Tree Display for Gene: WBGene00029553

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Name Class

WBGene00029553SMapS_parentSequencecb25.fpc0829
IdentityVersion2
NameCGC_nameCbr-lron-1From_analysisInferred_from_orthology
Sequence_nameCBG07554
Molecular_nameCBG07554
CBG07554.1
CBP15944
Other_nameCBG_07554Accession_evidenceNDBHE601041
Public_nameCbr-lron-1
DB_infoDatabaseNDBlocus_tagCBG_07554
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:59WBPerson1971EventImportedInitial conversion from brigace
209 Dec 2011 15:52:14WBPerson2970Name_changeCGC_nameCbr-lron-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlron
RNASeq_FPKMWBls:00000020.178759From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
1.63808From_analysisRNASeq.briggsae.WBls:0000002.control_mean
2.24842From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
2.48707From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
0.682301From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
1.39914From_analysisRNASeq.briggsae.WBls:0000002.control_mean
1.46536From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000030.071637From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.911779From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
1.75192From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
1.24691From_analysisRNASeq.briggsae.WBls:0000003.control_mean
1.91717From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000410.63From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
12.1213From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
9.13863From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
11.3268From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
11.624From_analysisRNASeq.briggsae.WBls:0000004.control_mean
12.0608From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
13.4724From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000270.293816From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
11.9045From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.39722From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
4.53185From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.87244From_analysisRNASeq.briggsae.WBls:0000027.control_median
4.34766From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
4.4858From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000355.09415From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000381.26197From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
1.50977From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
1.67075From_analysisRNASeq.briggsae.WBls:0000038.control_median
1.83172From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
2.66743From_analysisRNASeq.briggsae.WBls:0000038.control_mean
6.06627From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:00000410.01435From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.109834From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.119332From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.128831From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.166585From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.413324From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
0.146051From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.163271From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
0.194543From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.337649From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000630.088728From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0.190699From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.238329From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.434891From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.477329From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
0.139713From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.198608From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:00001011.24406From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2.25614From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
1.25302From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2.88779From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (23)
ParalogWBGene00025696Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029554Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00033540Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035250Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035613Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00037524Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00041068Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: BspA type Leucine rich repeat region; Leucine-rich repeat, typical subtype; Leucine-rich repeat; BspA type Leucine rich repeat region (6 copies); Leucine-rich repeat domain superfamily; Cysteine-rich flanking region, C-terminal; and Leucine rich repeat. Is an ortholog of C. elegans lron-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG07554
Corresponding_CDS_historyCBG07554:bp194
Corresponding_transcriptCBG07554.1
Experimental_infoExpr_patternExpr1060767
Microarray_resultsGPL8303_CB6_WBGene00029553_A
GPL8303_CB6_WBGene00029553_B
GPL14143_CBG07554_1268-1327_0.691_101_C
GPL14143_CBG07554_1393-1452_0.800_3_A
GPL14143_CBG07554_1599-1658_0.771_32_B
MethodGene