WormBase Tree Display for Gene: WBGene00113724
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WBGene00113724 | SMap | S_parent | Sequence | PPA_ChrIV | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||||
Name | CGC_name | Ppa-sorb-1 | From_analysis | Inferred_from_orthology | |||||
Sequence_name | PPA24170 | ||||||||
Molecular_name | PPA24170 | ||||||||
PPA24170.1 | |||||||||
PP70227 | |||||||||
Other_name | GENEPREDICTION_SNAP300000081059 | ||||||||
GENEPREDICTION_SNAP300000081060 | |||||||||
UMM-S2838-29.79 | Person_evidence | WBPerson606 | |||||||
Ppa-tag-208 | From_analysis | Inferred_from_orthology | |||||||
Public_name | Ppa-sorb-1 | ||||||||
Species | Pristionchus pacificus | ||||||||
History | Version_change | 1 | 06 Aug 2008 09:05:06 | WBPerson4055 | Event | Imported | from NGASP | ||
2 | 24 Nov 2017 09:46:51 | WBPerson4055 | Event | Acquires_merge | WBGene00113725 | ||||
3 | 20 Mar 2018 10:26:11 | WBPerson4025 | Name_change | CGC_name | Ppa-sorb-1 | ||||
Other_name | Ppa-tag-208 | ||||||||
Acquires_merge | WBGene00113725 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | sorb | ||||||||
RNASeq_FPKM | WBls:0000032 | 4.26233 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
WBls:0000101 | 3.09859 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
4.26233 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
5.03345 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
Ortholog (35) | |||||||||
Paralog | WBGene00091808 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
WBGene00107415 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
WBGene00112952 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
WBGene00117351 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
Structured_description | Automated_description | Is predicted to encode a protein with the following domains: SH3-like domain superfamily; SH3 domain; PDZ domain 6; Variant SH3 domain; PDZ superfamily; and PDZ domain. Is an ortholog of C. elegans sorb-1. In C. elegans, sorb-1 is involved in maintenance of mitochondrion location and sarcomere organization. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | PPA24170 | |||||||
Corresponding_transcript | PPA24170.1 | ||||||||
Other_sequence (29) | |||||||||
Experimental_info | Microarray_results (8) | ||||||||
Method | Gene |