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WormBase Tree Display for Gene: WBGene00140269

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Name Class

WBGene00140269SMapS_parentSequenceCbre_Contig6
IdentityVersion2
NameSequence_nameCBN01544
Molecular_nameCBN01544
CBN01544.1
CN03667
Other_nameCBN01544
Public_nameCBN01544
SpeciesCaenorhabditis brenneri
HistoryVersion_change130 Oct 2008 10:39:28WBPerson4055EventImportedfrom NGASP
Name_changeCGC_nameCbn-unc-55
220 Mar 2018 10:26:13WBPerson4025Name_changeCGC_nameRemoved
StatusLive
Gene_infoBiotypeSO:0001217
RNASeq_FPKMWBls:00000020.531618From_analysisRNASeq.brenneri.WBls:0000002.control_mean
1.57664From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
1.83026From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
1.90928From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
RNASeq.brenneri.WBls:0000002.control_median
WBls:00000041.52199From_analysisRNASeq.brenneri.WBls:0000004.control_mean
RNASeq.brenneri.WBls:0000004.control_median
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
3.04397From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
WBls:00000240.875122From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
0.947059From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
1.136From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
1.96954From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
WBls:00000384.10127From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
4.34896From_analysisRNASeq.brenneri.WBls:0000038.control_mean
RNASeq.brenneri.WBls:0000038.control_median
4.59664From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
WBls:0000041 (16)
WBls:00001013.04397From_analysisRNASeq.brenneri.total_over_all_stages.control_median
6.88017From_analysisRNASeq.brenneri.total_over_all_stages.control_mean
OrthologWBGene00030075Caenorhabditis briggsaeFrom_analysisOMA
WormBase-Compara
WBGene00070440Caenorhabditis remaneiFrom_analysisInparanoid_8
WormBase-Compara
WBGene00094553Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00137481Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00217407Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
CSP26.g6048Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g2915Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g1717Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP32.g11899Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP39.g9324Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g14209Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00015.g1007Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_I.g1550Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold498.g2228Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00462.g11688Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_13170Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_000420Caenorhabditis remaneiFrom_analysisWormBase-Compara
Pan_g13622Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g19416Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10073100Caenorhabditis inopinataFrom_analysisWormBase-Compara
WBGene00006790Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00223242Brugia malayiFrom_analysisWormBase-Compara
chrI_pilon.g1475Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00242085Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00288616Trichuris murisFrom_analysisWormBase-Compara
Paralog (222)
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Nuclear hormone receptor-like domain superfamily; Ligand-binding domain of nuclear hormone receptor; and Nuclear hormone receptor, ligand-binding domain. Is an ortholog of C. elegans unc-55. In C. elegans, unc-55 is involved in cell fate specification and negative regulation of transcription by RNA polymerase II.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBN01544
Corresponding_transcriptCBN01544.1
Experimental_infoMicroarray_resultsGPL14142_CBN01544_195-254_0.825_3_A
Remark[180319 gw3] The CGC name Cbn-unc-55 was deleted as there was no evidence to support it. This name has correctly been assigned to WBGene00184992Curator_confirmedWBPerson4025
MethodGene