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WormBase Tree Display for Gene: WBGene00271405

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Name Class

WBGene00271405SMapS_parentSequencecb25.fpc2976
IdentityVersion1
NameSequence_nameCBG30843
Molecular_nameCBG30843
CBG30843.1
CBP47444
Public_nameCBG30843
SpeciesCaenorhabditis briggsae
HistoryVersion_change120 Oct 2016 12:11:13WBPerson4025EventCreated
StatusLive
Gene_infoBiotypeSO:0001217
RNASeq_FPKMWBls:00000020From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
2.03227From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
20.3273From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
7.45319From_analysisRNASeq.briggsae.WBls:0000002.control_mean
5.36676From_analysisRNASeq.briggsae.WBls:0000002.control_median
7.7652From_analysisRNASeq.briggsae.WBls:0000002.control_mean
8.70124From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000310.3965From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
20.7929From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
6.93097From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:00000040From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
10.4873From_analysisRNASeq.briggsae.WBls:0000004.control_mean
52.4364From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (11)
WBls:00000270From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.62553From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
4.02964From_analysisRNASeq.briggsae.WBls:0000027.control_mean
9.46339From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
16.8457From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
6.04446From_analysisRNASeq.briggsae.WBls:0000027.control_median
7.23365From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:000003541.5526From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003816.1026From_analysisRNASeq.briggsae.WBls:0000038.control_mean
17.1628From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
18.0007From_analysisRNASeq.briggsae.WBls:0000038.control_median
18.8385From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
28.4093From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:000004110.5222From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
11.8736From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
7.41855From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
7.61236From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
9.06728From_analysisRNASeq.briggsae.WBls:0000041.control_median
9.35668From_analysisRNASeq.briggsae.WBls:0000041.control_mean
11.1979From_analysisRNASeq.briggsae.WBls:0000041.control_median
12.525From_analysisRNASeq.briggsae.WBls:0000041.control_mean
13.3716From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
24.3515From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000631.00992From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
5.04958From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.841597From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:00001012.03227From_analysisRNASeq.briggsae.total_over_all_stages.control_median
7.64075From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
2.3289From_analysisRNASeq.briggsae.total_over_all_stages.control_median
8.87601From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00280087
00280088
00280089
00280090
00280091
Ortholog (49)
ParalogWBGene00028075Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00028556Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00042488Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00045384Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00271441Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable L-ascorbic acid binding activity; iron ion binding activity; and procollagen-proline 4-dioxygenase activity. Predicted to be located in endoplasmic reticulum. Is an ortholog of C. elegans dpy-18. In C. elegans, dpy-18 is involved in several processes, including cuticle development involved in collagen and cuticulin-based cuticle molting cycle; embryo development; and embryonic body morphogenesis.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG30843
Corresponding_transcriptCBG30843.1
Other_sequenceCBC02121_1
Experimental_infoMicroarray_resultsGPL14143_CBG13195_1167-1226_0.908_27_B
GPL14143_CBG13195_1293-1352_0.934_4_C
MethodGene