WormBase Tree Display for Expression_cluster: WBPaper00049311:Ag-MNP_regulated

WBPaper00049311:Ag-MNP_regulated Description: Transcripts that showed significantly altered expression after 48 hour exposure to Ag-MNP.
  Species: Caenorhabditis elegans
  Algorithm: Data were screened for differences of each treatment (Ag-MNP, sAg-MNP, and AgNO3) from control using one-way ANOVA with contrasts. The false discovery rate (FDR) threshold was set at 0.2 and the fold change was required to be greater than 1.5, and a P-value <= 0.05. The FDR of 0.2 was selected to balance the protection against false positives while minimizing the rate of false negatives. Using Partek, genes that were significantly different from control in at least one treatment were then analyzed using agglomerative hierarchical cluster analysis (HCA). HCA is a 2-Pass clustering method; the first pass is a K-means clustering and in the second pass the K-means clusters are joined by agglomerative clustering.
  Reference: WBPaper00049311
  Microarray_results: 171970_x_at
    172706_x_at
    172989_s_at
    173139_s_at
    173301_s_at
    173620_s_at
    174001_s_at
    175175_at
    176437_at
    177276_at
    178331_at
    178332_s_at
    179174_at
    179650_at
    179778_at
    180234_at
    180453_at
    180678_at
    180913_at
    181123_at
    181199_at
    181703_at
    182839_at
    183090_s_at
    183132_at
    183309_at
    183418_at
    183438_s_at
    183575_at
    183603_at
    184052_s_at
    184633_at
    184955_at
    185044_at
    185247_at
    185494_at
    185557_s_at
    185803_at
    186072_s_at
    186337_at
    186522_s_at
    186655_at
    186781_at
    187701_at
    187761_s_at
    188106_at
    188123_at
    188849_at
    188975_at
    189126_s_at
    189185_at
    189315_at
    189341_s_at
    189544_at
    189584_s_at
    189913_at
    189972_at
    190094_s_at
    190193_s_at
    190674_at
    190681_at
    191494_s_at
    191641_s_at
    191689_s_at
    192190_at
    192240_s_at
    192281_at
    192407_at
    192450_at
    192465_at
    193216_at
    193293_at
    193926_at
    194066_s_at
    194142_x_at
    171941_s_at
    172188_x_at
    173033_at
    173830_at
    174552_s_at
    175239_at
    175430_s_at
    177131_s_at
    177747_at
    178045_at
    178895_at
    179305_at
    179620_s_at
    180562_at
    180606_at
    180946_at
    182528_at
    182930_at
    183676_s_at
    186492_s_at
    187280_s_at
    187433_at
    187525_s_at
    187974_s_at
    187999_at
    188914_at
    189006_s_at
    189080_at
    189392_s_at
    190711_at
    190958_s_at
    192635_at
    192671_at
    192672_s_at
    173311_s_at
    173572_s_at
    174075_at
    174351_at
    174459_at
    178591_at
    180341_s_at
    182395_at
    183002_at
    188250_at
    188339_at
    188763_at
    188822_at
    189419_at
    189463_at
    189476_s_at
    192480_s_at
    192755_s_at
    193152_s_at
    194163_s_at
    171775_x_at
    177660_at
    185593_at
    189469_at
    190713_at
    192968_s_at
  Gene (126)
  Attribute_of: Microarray_experiment: WBPaper00049311:Control_Rep1
      WBPaper00049311:Control_Rep2
      WBPaper00049311:Control_Rep3
      WBPaper00049311:PristineParticles_Rep1
      WBPaper00049311:PristineParticles_Rep2
      WBPaper00049311:PristineParticles_Rep3
  Regulation: Regulated_by_molecule: WBMol:00005288
  Associated_with: Life_stage: WBls:0000035