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WormBase Tree Display for Expression_cluster: WBPaper00049311:Ag-MNP_regulated

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Name Class

WBPaper00049311:Ag-MNP_regulatedDescriptionTranscripts that showed significantly altered expression after 48 hour exposure to Ag-MNP.
SpeciesCaenorhabditis elegans
AlgorithmData were screened for differences of each treatment (Ag-MNP, sAg-MNP, and AgNO3) from control using one-way ANOVA with contrasts. The false discovery rate (FDR) threshold was set at 0.2 and the fold change was required to be greater than 1.5, and a P-value <= 0.05. The FDR of 0.2 was selected to balance the protection against false positives while minimizing the rate of false negatives. Using Partek, genes that were significantly different from control in at least one treatment were then analyzed using agglomerative hierarchical cluster analysis (HCA). HCA is a 2-Pass clustering method; the first pass is a K-means clustering and in the second pass the K-means clusters are joined by agglomerative clustering.
ReferenceWBPaper00049311
Microarray_results171970_x_at
172706_x_at
172989_s_at
173139_s_at
173301_s_at
173620_s_at
174001_s_at
175175_at
176437_at
177276_at
178331_at
178332_s_at
179174_at
179650_at
179778_at
180234_at
180453_at
180678_at
180913_at
181123_at
181199_at
181703_at
182839_at
183090_s_at
183132_at
183309_at
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183575_at
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184052_s_at
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185557_s_at
185803_at
186072_s_at
186337_at
186522_s_at
186655_at
186781_at
187701_at
187761_s_at
188106_at
188123_at
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189341_s_at
189544_at
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190094_s_at
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190674_at
190681_at
191494_s_at
191641_s_at
191689_s_at
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192240_s_at
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192407_at
192450_at
192465_at
193216_at
193293_at
193926_at
194066_s_at
194142_x_at
171941_s_at
172188_x_at
173033_at
173830_at
174552_s_at
175239_at
175430_s_at
177131_s_at
177747_at
178045_at
178895_at
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180946_at
182528_at
182930_at
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180341_s_at
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183002_at
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189463_at
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192480_s_at
192755_s_at
193152_s_at
194163_s_at
171775_x_at
177660_at
185593_at
189469_at
190713_at
192968_s_at
GeneWBGene00044201
WBGene00009982
WBGene00011235
WBGene00000407
WBGene00001564
WBGene00015369
WBGene00019510
WBGene00017361
WBGene00016262
WBGene00022643
WBGene00010722
WBGene00001796
WBGene00010658
WBGene00017861
WBGene00022553
WBGene00018724
WBGene00008589
WBGene00000169
WBGene00019331
WBGene00015993
WBGene00018949
WBGene00012428
WBGene00022814
WBGene00020302
WBGene00019368
WBGene00019668
WBGene00003758
WBGene00020497
WBGene00009081
WBGene00000041
WBGene00020872
WBGene00018057
WBGene00015495
WBGene00015729
WBGene00018342
WBGene00003096
WBGene00016180
WBGene00019968
WBGene00018380
WBGene00020882
WBGene00020878
WBGene00018062
WBGene00004996
WBGene00015469
WBGene00011321
WBGene00007112
WBGene00016970
WBGene00007599
WBGene00005228
WBGene00010705
WBGene00013875
WBGene00010204
WBGene00018286
WBGene00019547
WBGene00016335
WBGene00019730
WBGene00020373
WBGene00019516
WBGene00014258
WBGene00007969
WBGene00007422
WBGene00019978
WBGene00002083
WBGene00018997
WBGene00018269
WBGene00000975
WBGene00001752
WBGene00023407
WBGene00008625
WBGene00000250
WBGene00000781
WBGene00012968
WBGene00014047
WBGene00009691
WBGene00010857
WBGene00008396
WBGene00001320
WBGene00002263
WBGene00017501
WBGene00001598
WBGene00021236
WBGene00010273
WBGene00044107
WBGene00009446
WBGene00011061
WBGene00013975
WBGene00011694
WBGene00015052
WBGene00009600
WBGene00016670
WBGene00017469
WBGene00004157
WBGene00017270
WBGene00017500
WBGene00004094
WBGene00014245
WBGene00015102
WBGene00003992
WBGene00014093
WBGene00001423
WBGene00019819
WBGene00017892
WBGene00003616
WBGene00004798
WBGene00001729
WBGene00011508
WBGene00006651
WBGene00001734
WBGene00001726
WBGene00001732
WBGene00001728
WBGene00000731
WBGene00000697
WBGene00021553
WBGene00016943
WBGene00008850
WBGene00000659
WBGene00000688
WBGene00000613
WBGene00000593
WBGene00003422
WBGene00014006
WBGene00019236
WBGene00000782
WBGene00017695
WBGene00004398
Attribute_ofMicroarray_experimentWBPaper00049311:Control_Rep1
WBPaper00049311:Control_Rep2
WBPaper00049311:Control_Rep3
WBPaper00049311:PristineParticles_Rep1
WBPaper00049311:PristineParticles_Rep2
WBPaper00049311:PristineParticles_Rep3
RegulationRegulated_by_moleculeWBMol:00005288
Associated_withLife_stageWBls:0000035