WormBase Tree Display for Expression_cluster: WBPaper00053020:OrsayVirus-infection_downregulated
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| WBPaper00053020:OrsayVirus-infection_downregulated | Description | Transcripts that showed significantly decreased expression after infected by 20ul Orsay virus filtrate per 50-mm plate for 3 days starting from 16 hours after L4 larva stage. | |
|---|---|---|---|
| Species | Caenorhabditis elegans | ||
| Algorithm | RNA-seq data were aligned to the C. elegans transcriptome WS190 using bowtie2. Counts were obtained from resulting BAM files using BEDTools, and these were used to generate normalized data tables using DESeq. A cutoff of mean 25 normalized reads (normalized according to DESeq negative binomial distribution) for at least one condition was used, and significantly altered genes were selected (DESeq Benjamini-Hochberg multiple-test correction q < 0.1). | ||
| Reference | WBPaper00053020 | ||
| Based_on_WB_Release | 190 | ||
| Gene (41) | |||
| Attribute_of | RNASeq | ||
| Regulation | Regulated_by_treatment | Virus infection: Orsay virus infection at 1-day post L4 adult hermaphrodite for three days. | |
| Associated_with | Life_stage | WBls:0000067 |
