WormBase Tree Display for Variation: WBVar00000083
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WBVar00000083 | Evidence | Paper_evidence | WBPaper00002920 | ||||
---|---|---|---|---|---|---|---|
Name | Public_name | ad1051 | |||||
Other_name | CE25076:p.Trp312Ter | ||||||
CE13573:p.Trp133Ter | |||||||
R11G10.1b.1:c.399G>A | |||||||
R11G10.1a.1:c.936G>A | |||||||
HGVSg | CHROMOSOME_V:g.13501125C>T | ||||||
Sequence_details | SMap | S_parent | Sequence | T10G3 | |||
Flanking_sequences | tagtgtacaactgacattccgtgagagttg | gtcgataagagactcagcttcggagtgaaa | |||||
Mapping_target | T10G3 | ||||||
Type_of_mutation | Substitution | g | a | Paper_evidence | WBPaper00002920 | ||
SeqStatus | Sequenced | ||||||
Variation_type | Allele | ||||||
Origin | Species | Caenorhabditis elegans | |||||
Strain (12) | |||||||
Laboratory | DA | ||||||
Status | Live | ||||||
Affects | Gene | WBGene00000233 | |||||
Transcript | R11G10.1b.1 | VEP_consequence | stop_gained | ||||
VEP_impact | HIGH | ||||||
HGVSc | R11G10.1b.1:c.399G>A | ||||||
HGVSp | CE13573:p.Trp133Ter | ||||||
cDNA_position | 473 | ||||||
CDS_position | 399 | ||||||
Protein_position | 133 | ||||||
Exon_number | 4/7 | ||||||
Codon_change | tgG/tgA | ||||||
Amino_acid_change | W/* | ||||||
R11G10.1a.1 | VEP_consequence | stop_gained | |||||
VEP_impact | HIGH | ||||||
HGVSc | R11G10.1a.1:c.936G>A | ||||||
HGVSp | CE25076:p.Trp312Ter | ||||||
cDNA_position | 1029 | ||||||
CDS_position | 936 | ||||||
Protein_position | 312 | ||||||
Exon_number | 6/9 | ||||||
Codon_change | tgG/tgA | ||||||
Amino_acid_change | W/* | ||||||
Interactor | WBInteraction000500426 | ||||||
WBInteraction000557980 | |||||||
WBInteraction000557981 | |||||||
WBInteraction000557983 | |||||||
Genetics | Interpolated_map_position | V | 5.36893 | ||||
Description (2) | |||||||
Reference (11) | |||||||
Remark | The correct genotype of the DA1316 strain is avr-14(ad1305) I; avr-15(vu227) glc-1(pk54) V. This strain was incorrectly annotated as avr-14(ad1302) I; avr-15(ad1051) glc-1(pk54) V. when submitted to the CGC. | ||||||
The correct genotype of the DA1370 strain is avr-15(vu227) glc-1(pk54) V. This strain was incorrectly annotated as avr-15(ad1051) glc-1(pk54) V. when submitted to the CGC. | |||||||
Method | Substitution_allele |