WormBase Tree Display for Variation: WBVar00000442

WBVar00000442 Evidence: Paper_evidence: WBPaper00024442
  Name: Public_name: bc243
    Other_name: F55B12.3b.1:c.249+78_787del
      F55B12.3a.1:c.255+78_793del
    HGVSg: CHROMOSOME_V:g.13819804_13820654del
  Sequence_details: SMap: S_parent: Sequence: F55B12
    Flanking_sequences: GCGTTGCGGCTAATACACATGCAATAAATTAATATTTGAA ATGATGATGTCTTGGTGACTGGATCTGACGATAACACTCTT
    Mapping_target: F55B12
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: MD
    Status: Live
  Affects: Gene: WBGene00004767
    Transcript: F55B12.3b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F55B12.3b.1:c.249+78_787del
        cDNA_position: ?-791
        CDS_position: ?-787
        Protein_position: ?-263
        Intron_number: 4-7/12
        Exon_number: 5-8/13
      F55B12.3a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F55B12.3a.1:c.255+78_793del
        cDNA_position: ?-797
        CDS_position: ?-793
        Protein_position: ?-265
        Intron_number: 4-7/12
        Exon_number: 5-8/13
    Interactor: WBInteraction000521916
  Genetics: Interpolated_map_position: V 5.60656
  Description: Phenotype: WBPhenotype:0000006 Paper_evidence: WBPaper00024442
        Curator_confirmed: WBPerson48
        Penetrance: Incomplete: penetrance is complete at 20 and 15 deg C Paper_evidence: WBPaper00024442
              Curator_confirmed: WBPerson48
        Temperature_sensitive: Cold_sensitive: 20 Paper_evidence: WBPaper00024442
              Curator_confirmed: WBPerson48
        Phenotype_assay: Temperature: 25 Paper_evidence: WBPaper00024442
              Curator_confirmed: WBPerson48
      WBPhenotype:0000683 Paper_evidence: WBPaper00024442
        Curator_confirmed: WBPerson48
        Remark: Causes extremely weak masculinization of hermaphrodites. Paper_evidence: WBPaper00024442
            Curator_confirmed: WBPerson48
        Recessive: Paper_evidence: WBPaper00024442
          Curator_confirmed: WBPerson48
        Variation_effect: Null: Paper_evidence: WBPaper00024442
            Curator_confirmed: WBPerson48
      WBPhenotype:0001275 Paper_evidence: WBPaper00024442
        Curator_confirmed: WBPerson48
        Remark: Causes increased lin-12 signaling. Paper_evidence: WBPaper00024442
            Curator_confirmed: WBPerson48
    Phenotype_not_observed: WBPhenotype:0000700 Paper_evidence: WBPaper00032182
        Curator_confirmed: WBPerson712
        Remark: No animals exhibited psuedovulvae. Paper_evidence: WBPaper00032182
            Curator_confirmed: WBPerson712
        Variation_effect: Null: Paper_evidence: WBPaper00032182
            Curator_confirmed: WBPerson712
  Reference: WBPaper00024442
    WBPaper00032182
  Method: Deletion_allele