WormBase Tree Display for Variation: WBVar00003278
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WBVar00003278 | Evidence | Paper_evidence | WBPaper00037807 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00003278 | |||
Other_name | haw31778 | ||||
cewivar00187669 | |||||
Y38F1A.6.6:c.856-12A>C | |||||
Y38F1A.6.2:c.856-12A>C | |||||
Y38F1A.6.3:c.856-12A>C | |||||
Y38F1A.6.7:c.856-12A>C | |||||
Y38F1A.6.1:c.856-12A>C | |||||
Y38F1A.6.5:c.856-12A>C | |||||
Y38F1A.6.4:c.856-12A>C | |||||
HGVSg | CHROMOSOME_II:g.12995120T>G | ||||
Sequence_details | SMap | S_parent | Sequence | Y38F1A | |
Flanking_sequences | tattttccaatgatctgaaattata | aaattcatttagagcttcatggttg | |||
Mapping_target | Y38F1A | ||||
Type_of_mutation | Substitution | T | G | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
WGS_Hawaiian_Waterston | |||||
Million_mutation_project_reanalysis | |||||
Laboratory | RW | ||||
AX | |||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar01380644 | |||
Status | Live | ||||
Affects | Gene | WBGene00012608 | |||
Transcript | Y38F1A.6.6 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y38F1A.6.6:c.856-12A>C | ||||
Intron_number | 6/9 | ||||
Y38F1A.6.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y38F1A.6.1:c.856-12A>C | ||||
Intron_number | 6/9 | ||||
Y38F1A.6.5 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y38F1A.6.5:c.856-12A>C | ||||
Intron_number | 6/9 | ||||
Y38F1A.6.7 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y38F1A.6.7:c.856-12A>C | ||||
Intron_number | 6/9 | ||||
Y38F1A.6.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y38F1A.6.2:c.856-12A>C | ||||
Intron_number | 5/8 | ||||
Y38F1A.6.3 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y38F1A.6.3:c.856-12A>C | ||||
Intron_number | 7/10 | ||||
Y38F1A.6.4 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y38F1A.6.4:c.856-12A>C | ||||
Intron_number | 6/9 | ||||
Reference | WBPaper00037807 | ||||
Remark | [20081124 db] this Variation was previously named hw31778 | ||||
Method | WGS_Hawaiian_Waterston |