WormBase Tree Display for Variation: WBVar00003449
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| WBVar00003449 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00003449 | ||||
| Other_name | cbs3392 | |||||
| cb3392 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrII:g.4855580A>G | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0072a | ||
| Flanking_sequences | aatagtacaactacagtaaacctga | ttctagatgaagatactgtagctac | ||||
| Mapping_target | cb25.fpc0072a | |||||
| Type_of_mutation | Substitution | A | G | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 309 205 153 107 71 50 40 10 9 9 8 8 7 7 7 | ||
| ACNGT | Bst4CI, HpyCH4III, TaaI, Tsp4CI | 359 265 84 60 47 46 46 28 20 14 11 11 9 | ||||
| CTNAG | BstDEI, DdeI | 921 79 | ||||
| GAATTC | EcoRI, FunII | 502 498 | ||||
| CAC | HindI | 210 196 151 107 66 63 57 48 43 26 14 13 4 2 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 277 171 153 66 41 40 34 32 30 17 15 15 10 9 9 9 8 8 8 8 8 7 7 7 6 5 | ||||
| Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 380 205 157 153 40 10 9 9 8 8 7 7 7 | |||
| ACNGT | Bst4CI, HpyCH4III, TaaI, Tsp4CI | 265 234 125 84 60 47 46 46 28 20 14 11 11 9 | ||||
| CTNAG | BstDEI, DdeI | 496 425 79 | ||||
| GAATTC | EcoRI, FunII | 1000 | ||||
| CAC | HindI | 273 196 151 107 66 57 48 43 26 14 13 4 2 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 343 171 153 41 40 34 32 30 23 17 17 15 10 9 9 8 8 8 7 7 7 6 5 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00026966 | ||||
| Transcript | CBG04253a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG04253a.1:c.457-115T>C | |||||
| Intron_number | 4/22 | |||||
| CBG04253b.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG04253b.1:c.457-115T>C | |||||
| Intron_number | 4/22 | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: CrossMatch, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
