WormBase Tree Display for Variation: WBVar00003493
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WBVar00003493 | Name | Public_name | WBVar00003493 | ||
---|---|---|---|---|---|
Other_name | haw31821 | ||||
haw135199 | |||||
cewivar00187685 | |||||
Y38F1A.10c.1:c.790-1054C>T | |||||
Y38F1A.13:n.173G>A | |||||
Y38F1A.10a.1:c.790-1965C>T | |||||
Y38F1A.10f.1:c.799-1965C>T | |||||
Y38F1A.10e.1:c.799-1054C>T | |||||
HGVSg | CHROMOSOME_II:g.13020945G>A | ||||
Sequence_details | SMap | S_parent | Sequence | Y38F1A | |
Flanking_sequences | cactacatgaaacagatgatctgta | tgagaagcgatcaagggagggcggc | |||
Mapping_target | Y38F1A | ||||
Type_of_mutation | Substitution | G | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
WGS_Hawaiian_Waterston | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
WBStrain00006640 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022850 | From_analysis | WGS_De_Bono | |||
Million_mutation_project_reanalysis | |||||
WBStrain00022852 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022856 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022868 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00022886 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023018 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023192 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00024204 | From_analysis | Million_mutation_project_reanalysis | |||
Laboratory | RW | ||||
AX | |||||
Person | WBPerson1562 | ||||
WBPerson4037 | |||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar01315716 | |||
WBVar00555064 | |||||
WBVar01380702 | |||||
Status | Live | ||||
Affects | Gene | WBGene00202000 | |||
WBGene00003144 | |||||
Transcript | Y38F1A.10f.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y38F1A.10f.1:c.799-1965C>T | ||||
Intron_number | 6/10 | ||||
Y38F1A.10a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y38F1A.10a.1:c.790-1965C>T | ||||
Intron_number | 7/12 | ||||
Y38F1A.10c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y38F1A.10c.1:c.790-1054C>T | ||||
Intron_number | 7/13 | ||||
Y38F1A.10e.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y38F1A.10e.1:c.799-1054C>T | ||||
Intron_number | 7/13 | ||||
Y38F1A.13 | VEP_consequence | non_coding_transcript_exon_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y38F1A.13:n.173G>A | ||||
cDNA_position | 173 | ||||
Exon_number | 1/1 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00037807 | |||||
Remark | [20081124 db] this Variation was previously named hw31821 | ||||
Method | WGS_Hawaiian_Waterston |