WormBase Tree Display for Variation: WBVar00003494

WBVar00003494 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00003494
    Other_name: cbs3401
      cb3401 Paper_evidence: WBPaper00055507
    HGVSg: chrII:g.4962414G>T
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0072a
    Flanking_sequences: accagtaagttggatagatccgatt tctactagagaatttgagaaaaaat
    Mapping_target: cb25.fpc0072a
    Type_of_mutation: Substitution: G T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: GTMKAC AccI, FblI, XmiI 501 499
        AACGTT AclI, Psp1406I 712 288
        GTNNAC Hpy8I 498 430 72
        ACGT HpyCH4IV, MaeII, TaiI, TscI 712 237 51
      Polymorphic_strain_digest: GTMKAC AccI, FblI, XmiI 1000
        AACGTT AclI, Psp1406I 1000
        GTNNAC Hpy8I 928 72
        ACGT HpyCH4IV, MaeII, TaiI, TscI 763 237
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00026983
    Transcript: CBG04272a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG04272a.1:c.2733+22G>T
        Intron_number: 24/25
      CBG04272b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG04272b.1:c.2790+22G>T
        Intron_number: 23/24
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP