WormBase Tree Display for Variation: WBVar00003509

WBVar00003509 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00003509
    Other_name: cbs3404
      cb3404 Paper_evidence: WBPaper00055507
    HGVSg: chrII:g.5023099C>A
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0072a
    Flanking_sequences: tactaaaaattgcttattctgagct aaaaatcgagtttctaaagcctaaa
    Mapping_target: cb25.fpc0072a
    Type_of_mutation: Substitution: C A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: GWGCWC Alw21I, AspHI, Bbv12I, BsiHKAI, HgiAI 501 499
        GACNNNGTC AspI, PflFI, PsyI, TelI, Tth111I 1000
        GRGCYC BanII, Eco24I, EcoT38I, FriOI, HgiJII 501 499
        GDGCHC BmyI, Bsp1286I, MhlI, SduI 501 499
        ACNGT Bst4CI, HpyCH4III, TaaI, Tsp4CI 1000
        GAGCTC Ecl136II, EcoICRI, Psp124BI, SacI, SstI 503 497
        CAC HindI 346 164 107 88 82 73 45 39 27 17 7 3 2
      Polymorphic_strain_digest: GWGCWC Alw21I, AspHI, Bbv12I, BsiHKAI, HgiAI 1000
        GACNNNGTC AspI, PflFI, PsyI, TelI, Tth111I 532 468
        GRGCYC BanII, Eco24I, EcoT38I, FriOI, HgiJII 1000
        GDGCHC BmyI, Bsp1286I, MhlI, SduI 1000
        ACNGT Bst4CI, HpyCH4III, TaaI, Tsp4CI 532 468
        GAGCTC Ecl136II, EcoICRI, Psp124BI, SacI, SstI 1000
        CAC HindI 229 164 117 107 88 82 73 45 39 27 17 7 3 2
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00026993
    Transcript: CBG04283.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG04283.1:c.5331+68C>A
        Intron_number: 25/31
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP