WormBase Tree Display for Variation: WBVar00003514
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WBVar00003514 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
WBPaper00055507 | ||||||
Name | Public_name | WBVar00003514 | ||||
Other_name | cbs3405 | |||||
cb3405 | Paper_evidence | WBPaper00055507 | ||||
HGVSg | chrII:g.5023190A>T | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc0072a | ||
Flanking_sequences | atttccagtcaaatctgacgatttt | gggcttaaaattagttttttagtac | ||||
Mapping_target | cb25.fpc0072a | |||||
Type_of_mutation | Substitution | A | T | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | GWGCWC | Alw21I, AspHI, Bbv12I, BsiHKAI, HgiAI | 592 408 | ||
GACNNNGTC | AspI, PflFI, PsyI, TelI, Tth111I | 1000 | ||||
GRGCYC | BanII, Eco24I, EcoT38I, FriOI, HgiJII | 592 408 | ||||
GDGCHC | BmyI, Bsp1286I, MhlI, SduI | 592 408 | ||||
ACNGT | Bst4CI, HpyCH4III, TaaI, Tsp4CI | 1000 | ||||
GAGCTC | Ecl136II, EcoICRI, Psp124BI, SacI, SstI | 594 406 | ||||
CAC | HindI | 346 255 88 82 73 45 39 27 17 16 7 3 2 | ||||
Polymorphic_strain_digest | GWGCWC | Alw21I, AspHI, Bbv12I, BsiHKAI, HgiAI | 1000 | |||
GACNNNGTC | AspI, PflFI, PsyI, TelI, Tth111I | 623 377 | ||||
GRGCYC | BanII, Eco24I, EcoT38I, FriOI, HgiJII | 1000 | ||||
GDGCHC | BmyI, Bsp1286I, MhlI, SduI | 1000 | ||||
ACNGT | Bst4CI, HpyCH4III, TaaI, Tsp4CI | 623 377 | ||||
GAGCTC | Ecl136II, EcoICRI, Psp124BI, SacI, SstI | 1000 | ||||
CAC | HindI | 255 229 117 88 82 73 45 39 27 17 16 7 3 2 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Affects | Gene | WBGene00026993 | ||||
Transcript | CBG04283.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | |||||
HGVSc | CBG04283.1:c.5331+159A>T | |||||
Intron_number | 25/31 | |||||
Reference | WBPaper00030778 | |||||
WBPaper00055507 | ||||||
Remark | Predicted by: Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |