WormBase Tree Display for Variation: WBVar00003539

WBVar00003539 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00003539
    Other_name: cbs3410
      cb3410 Paper_evidence: WBPaper00055507
    HGVSg: chrII:g.5025267T>G
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0072a
    Flanking_sequences: aaacgaccaaaatatgaaatttgtg gaaatttgggccgtttttagctaga
    Mapping_target: cb25.fpc0072a
    Type_of_mutation: Substitution: T G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest (13)
      Polymorphic_strain_digest (13)
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00026993
      WBGene00026996
    Transcript: CBG04283.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG04283.1:c.5679+499T>G
        Intron_number: 28/31
      CBG04286.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG04286.1:c.848-70A>C
        Intron_number: 6/8
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP