WormBase Tree Display for Variation: WBVar00003554

WBVar00003554 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00003554
    Other_name: cbs3413
      cb3413 Paper_evidence: WBPaper00055507
    HGVSg: chrII:g.5051622A>G
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0072a
    Flanking_sequences: ccgctggaaatgtctgaaagtcgct cccgtaaatcgcgccaaaccctcgc
    Mapping_target: cb25.fpc0072a
    Type_of_mutation: Substitution: A G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: GCNGC BthCI, Fnu4HI, Fsp4HI, ItaI, SatI 1000
        GCWGC TseI 1000
      Polymorphic_strain_digest: GCNGC BthCI, Fnu4HI, Fsp4HI, ItaI, SatI 500 500
        GCWGC TseI 503 497
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00027001
    Transcript: CBG04293a.1 VEP_consequence: 5_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: CBG04293a.1:c.-246A>G
        cDNA_position: 474
        Exon_number: 1/12
      CBG04293b.1 VEP_consequence: 5_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: CBG04293b.1:c.-246A>G
        cDNA_position: 474
        Exon_number: 1/11
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP