WormBase Tree Display for Variation: WBVar00003574

WBVar00003574 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00003574
    Other_name: cbs3417
      cb3417 Paper_evidence: WBPaper00055507
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0072a
    Flanking_sequences: tttttccaaatttcagcaaaacaat gcgaatcagacttgatattttccaa
    Mapping_target: cb25.fpc0072a
    Type_of_mutation: Substitution: T C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CGCG AccII, Bsh1236I, BstFNI, BstUI, FnuDII, MvnI, SelI, ThaI 601 252 147
        RAATTY AcsI, ApoI, XapI 382 127 124 118 89 79 47 20 14
        TTCGAA AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI 797 203
        TCGCGA Bsp68I, NruI 853 147
        GAATTC EcoRI, FunII 760 240
        TCNNGA Hpy178III, Hpy188III 301 269 248 84 62 36
        CAATTG MfeI, MunI 504 496
        AATT Sse9I, TasI, Tsp509I, TspEI 118 114 104 90 89 84 64 58 54 47 45 21 20 18 17 14 14 13 10 6
      Polymorphic_strain_digest: CGCG AccII, Bsh1236I, BstFNI, BstUI, FnuDII, MvnI, SelI, ThaI 354 252 247 147
        RAATTY AcsI, ApoI, XapI 382 242 127 89 79 47 20 14
        TTCGAA AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI 416 381 203
        TCGCGA Bsp68I, NruI 499 354 147
        GAATTC EcoRI, FunII 1000
        TCNNGA Hpy178III, Hpy188III 354 301 163 84 62 36
        CAATTG MfeI, MunI 1000
        AATT Sse9I, TasI, Tsp509I, TspEI 208 114 104 89 84 64 59 58 54 47 21 20 18 17 14 13 10 6
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP